A reservoir of ‘historical’ antibiotic resistance genes in remote pristine Antarctic soils

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Antibiotic tolerance facilitates the evolution of resistance

(2017) Irit Levin-Reisman et al.   SCIENCE

Taxonomic and functional patterns across soil microbial communities of global biomes

(2017) Melline Fontes Noronha et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Environmental drivers of viral community composition in Antarctic soils identified by viromics

(2017) Evelien M. Adriaenssens et al.   Microbiome

Continental-scale pollution of estuaries with antibiotic resistance genes

(2017) Yong-Guan Zhu et al.   Nature Microbiology

ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database

(2016) Ying Yang et al.   BIOINFORMATICS

The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome

(2016) Hang Wang et al.   ISME Journal

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Evaluating the mobility potential of antibiotic resistance genes in environmental resistomes without metagenomics

(2016) Katariina Pärnänen et al.   Scientific Reports

MetaQUAST: evaluation of metagenome assemblies

(2015) Alla Mikheenko et al.   BIOINFORMATICS

Genetic signatures indicate widespread antibiotic resistance and phage infection in microbial communities of the McMurdo Dry Valleys, East Antarctica

(2015) Sean T. S. Wei et al.   POLAR BIOLOGY

Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats

(2015) Jonathan S. Lefcheck et al.   Nature Communications

Functional Characterization of Bacteria Isolated from Ancient Arctic Soil Exposes Diverse Resistance Mechanisms to Modern Antibiotics

(2015) Gabriel G. Perron et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment

(2014) Joseph Nesme et al.   CURRENT BIOLOGY

Bacterial phylogeny structures soil resistomes across habitats

(2014) Kevin J. Forsberg et al.   NATURE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Airborne Bacterial Populations Above Desert Soils of the McMurdo Dry Valleys, Antarctica

(2013) Eric M. Bottos et al.   MICROBIAL ECOLOGY

The Culturable Soil Antibiotic Resistome: A Community of Multi-Drug Resistant Bacteria

(2013) Fiona Walsh et al.   PLoS One

The soil resistome: The anthropogenic, the native, and the unknown

(2013) Eddie Cytryn   SOIL BIOLOGY & BIOCHEMISTRY

Antibiotic Resistance Is Prevalent in an Isolated Cave Microbiome

(2012) Kirandeep Bhullar et al.   PLoS One

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Distribution of antibiotic resistance genes in glacier environments

(2012) Takahiro Segawa et al.   Environmental Microbiology Reports

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Antibiotics as Signal Molecules

(2011) Diego Romero et al.   CHEMICAL REVIEWS

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

Non-indigenous microorganisms in the Antarctic: assessing the risks

(2011) Don A. Cowan et al.   TRENDS IN MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Psychrotrophic Strain of Janthinobacterium lividum from a Cold Alaskan Soil Produces Prodigiosin

(2010) Patrick D. Schloss et al.   DNA AND CELL BIOLOGY

Antibiotic resistance and its cost: is it possible to reverse resistance?

(2010) Dan I. Andersson et al.   NATURE REVIEWS MICROBIOLOGY

Call of the wild: antibiotic resistance genes in natural environments

(2010) Heather K. Allen et al.   NATURE REVIEWS MICROBIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Antibiotic resistance among bacteria isolated from seawater and penguin fecal samples collected near Palmer Station, AntarcticaThis article is one of a selection of papers in the Special Issue on Polar and Alpine Microbiology.

(2009) Robert V. Miller et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Environmental pollution by antibiotics and by antibiotic resistance determinants

(2009) Jose Luis Martinez   ENVIRONMENTAL POLLUTION

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Extracellular DNA in soil and sediment: fate and ecological relevance

(2008) G. Pietramellara et al.   BIOLOGY AND FERTILITY OF SOILS

Bad Bugs, No Drugs: No ESKAPE! An Update from the Infectious Diseases Society of America

(2008) Helen W. Boucher et al.   CLINICAL INFECTIOUS DISEASES

Functional metagenomics reveals diverse β-lactamases in a remote Alaskan soil

(2008) Heather K Allen et al.   ISME Journal

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH

Bacteria Subsisting on Antibiotics

(2008) G. Dantas et al.   SCIENCE