Automated annotation of mobile antibiotic resistance in Gram-negative bacteria: the Multiple Antibiotic Resistance Annotator (MARA) and database

Comment on: Resistance gene naming and numbering: is it a new gene or not?

(2016) Philip J. Warburton et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Consolidating and Exploring Antibiotic Resistance Gene Data Resources

(2016) Basil Britto Xavier et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Identification and analysis of integrons and cassette arrays in bacterial genomes

(2016) Jean Cury et al.   NUCLEIC ACIDS RESEARCH

SSTAR, a Stand-Alone Easy-To-Use Antimicrobial Resistance Gene Predictor

(2016) Tom J. B. de Man et al.   mSphere

IS 26 -Mediated Formation of Transposons Carrying Antibiotic Resistance Genes

(2016) Christopher J. Harmer et al.   mSphere

Insertion Sequence IS 26 Reorganizes Plasmids in Clinically Isolated Multidrug-Resistant Bacteria by Replicative Transposition

(2015) Susu He et al.   mBio

What’s in a Name? IS Swi1 Corresponds to Transposons Related to Tn 2 and Tn 3 : FIG 1 

(2015) Sally R. Partridge   mBio

Complete Sequencing of IncI1 Sequence Type 2 Plasmid pJIE512b Indicates Mobilization ofblaCMY-2from an IncA/C Plasmid

(2014) Kaitlin A. Tagg et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Movement of IS26-Associated Antibiotic Resistance Genes Occurs via a Translocatable Unit That Includes a Single IS26 and Preferentially Inserts Adjacent to Another IS26

(2014) C. J. Harmer et al.   mBio

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

(2013) Sushim Kumar Gupta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A Novel Gene Cassette Potentially Conferring Resistance to Aminoglycosides

(2012) Sally R. Partridge et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Computational inference of grammars for larger-than-gene structures from annotated gene sequences

(2011) G. Tsafnat et al.   BIOINFORMATICS

Distribution of the blaTEM gene and blaTEM-containing transposons in commensal Escherichia coli

(2011) J. K. Bailey et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Database for bacterial group II introns

(2011) M. A. Candales et al.   NUCLEIC ACIDS RESEARCH

RAC: Repository of Antibiotic resistance Cassettes

(2011) G. Tsafnat et al.   Database-The Journal of Biological Databases and Curation

INTEGRALL: a database and search engine for integrons, integrases and gene cassettes

(2009) A. Moura et al.   BIOINFORMATICS

Context-driven discovery of gene cassettes in mobile integrons using a computational grammar

(2009) Guy Tsafnat et al.   BMC BIOINFORMATICS

AmpC  -Lactamases

(2009) G. A. Jacoby   CLINICAL MICROBIOLOGY REVIEWS

qnr Gene Nomenclature

(2008) G. Jacoby et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Evolution of the ISCR3 Group of ISCR Elements

(2008) M. A. Toleman et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Nomenclature of Plasmid-Mediated 16S rRNA Methylases Responsible for Panaminoglycoside Resistance

(2008) Y. Doi et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Bad Bugs, No Drugs: No ESKAPE! An Update from the Infectious Diseases Society of America

(2008) Helen W. Boucher et al.   CLINICAL INFECTIOUS DISEASES

Defining an extended-spectrum β-lactamase

(2008) D.M. Livermore   CLINICAL MICROBIOLOGY AND INFECTION

A Family of Insertion Sequences That Impacts Integrons by Specific Targeting of Gene Cassette Recombination Sites, the IS1111-attC Group

(2008) S. G. Tetu et al.   JOURNAL OF BACTERIOLOGY

Revised nomenclature for transposable genetic elements

(2008) Adam P. Roberts et al.   PLASMID