Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens

(2019) Molly Gasperini et al.   CELL

Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells

(2018) Tahsin Stefan Barakat et al.   Cell Stem Cell

Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome

(2018) Cai Li et al.   GENOME RESEARCH

Computational tools to unmask transposable elements

(2018) Patricia Goerner-Potvin et al.   NATURE REVIEWS GENETICS

Stimulation of Pol III-dependent 5S rRNA and U6 snRNA gene expression by AP-1 transcription factors

(2017) Richa Ahuja et al.   FEBS Journal

ALU ternative Regulation for Gene Expression

(2017) Ling-Ling Chen et al.   TRENDS IN CELL BIOLOGY

Enhancer SINEs Link Pol III to Pol II Transcription in Neurons

(2017) Cristina Policarpi et al.   Cell Reports

DNA methylation variation of human-specific Alu repeats

(2016) Arundhati Bakshi et al.   Epigenetics

DUSP11 activity on triphosphorylated transcripts promotes Argonaute association with noncanonical viral microRNAs and regulates steady-state levels of cellular noncoding RNAs

(2016) James M. Burke et al.   GENES & DEVELOPMENT

The epigenetic landscape ofAlurepeats delineates the structural and functional genomic architecture of colon cancer cells

(2016) Mireia Jordà et al.   GENOME RESEARCH

Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions

(2016) Jason Ernst et al.   NATURE BIOTECHNOLOGY

Alu repeats as transcriptional regulatory platforms in macrophage responses toM. tuberculosisinfection

(2016) Manuella Bouttier et al.   NUCLEIC ACIDS RESEARCH

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription

(2015) Zhonghui Tang et al.   CELL

Sequence Analysis and Characterization of Active HumanAlusubfamilies Based on the 1000 Genomes Pilot Project

(2015) Miriam K. Konkel et al.   Genome Biology and Evolution

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

(2014) Alexandre Fort et al.   NATURE GENETICS

Mobile DNA elements in the generation of diversity and complexity in the brain

(2014) Jennifer A. Erwin et al.   NATURE REVIEWS NEUROSCIENCE

Identification of RNA polymerase III-transcribed Alu loci by computational screening of RNA-Seq data

(2014) Anastasia Conti et al.   NUCLEIC ACIDS RESEARCH

Evolution of Alu Elements toward Enhancers

(2014) Ming Su et al.   Cell Reports

Modification of Enhancer Chromatin: What, How, and Why?

(2013) Eliezer Calo et al.   MOLECULAR CELL

Alu elements: an intrinsic source of human genome instability

(2013) Catherine Ade et al.   Current Opinion in Virology

Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation

(2012) Guoliang Li et al.   CELL

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

(2012) P. Batut et al.   GENOME RESEARCH

5′ end–centered expression profiling using cap-analysis gene expression and next-generation sequencing

(2012) Hazuki Takahashi et al.   Nature Protocols

RNA polymerase III transcription control elements: Themes and variations

(2011) Andrea Orioli et al.   GENE

Mapping and analysis of chromatin state dynamics in nine human cell types

(2011) Jason Ernst et al.   NATURE

Alu elements: know the SINEs

(2011) Prescott Deininger   GENOME BIOLOGY

Pol II and its associated epigenetic marks are present at Pol III–transcribed noncoding RNA genes

(2010) Artem Barski et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors

(2010) Andrew J Oler et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells

(2010) Zarmik Moqtaderi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Close association of RNA polymerase II and many transcription factors with Pol III genes

(2010) Debasish Raha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alu-directed transcriptional regulation of some novel miRNAs

(2009) Tong J Gu et al.   BMC GENOMICS

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

Active Alu retrotransposons in the human genome

(2008) E. A. Bennett et al.   GENOME RESEARCH

Different Functional Modes of p300 in Activation of RNA Polymerase III Transcription from Chromatin Templates

(2008) C. Mertens et al.   MOLECULAR AND CELLULAR BIOLOGY

Human Alu RNA Is a Modular Transacting Repressor of mRNA Transcription during Heat Shock

(2008) Peter D. Mariner et al.   MOLECULAR CELL