Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome
出版年份 2018 全文链接
标题
Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome
作者
关键词
-
出版物
GENOME RESEARCH
Volume 28, Issue 5, Pages 676-688
出版商
Cold Spring Harbor Laboratory
发表日期
2018-04-05
DOI
10.1101/gr.231449.117
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Transposable elements are the primary source of novelty in primate gene regulation
- (2017) Marco Trizzino et al. GENOME RESEARCH
- An atlas of human long non-coding RNAs with accurate 5′ ends
- (2017) Chung-Chau Hon et al. NATURE
- Promoter shape varies across populations and affects promoter evolution and expression noise
- (2017) Ignacio E Schor et al. NATURE GENETICS
- Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system
- (2017) Margherita Francescatto et al. Scientific Data
- Monitoring transcription initiation activities in rat and dog
- (2017) Marina Lizio et al. Scientific Data
- Pooled ChIP-Seq Links Variation in Transcription Factor Binding to Complex Disease Risk
- (2016) Ashley K. Tehranchi et al. CELL
- High-throughput functional comparison of promoter and enhancer activities
- (2016) Thomas A. Nguyen et al. GENOME RESEARCH
- NF-κB and IRF1 Induce Endogenous Retrovirus K Expression via Interferon-Stimulated Response Elements in Its 5′ Long Terminal Repeat
- (2016) Mamneet Manghera et al. JOURNAL OF VIROLOGY
- Genome-wide mapping of autonomous promoter activity in human cells
- (2016) Joris van Arensbergen et al. NATURE BIOTECHNOLOGY
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- OUP accepted manuscript
- (2016) NUCLEIC ACIDS RESEARCH
- Ensembl 2017
- (2016) Bronwen L. Aken et al. NUCLEIC ACIDS RESEARCH
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells
- (2015) Fan Guo et al. CELL
- Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions
- (2015) Fabian Grubert et al. CELL
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- The frequent evolutionary birth and death of functional promoters in mouse and human
- (2015) Robert S. Young et al. GENOME RESEARCH
- Tandem repeat variation in human and great ape populations and its impact on gene expression divergence
- (2015) Tugce Bilgin Sonay et al. GENOME RESEARCH
- Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
- (2015) Edward J. Grow et al. NATURE
- Human body epigenome maps reveal noncanonical DNA methylation variation
- (2015) Matthew D. Schultz et al. NATURE
- Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo
- (2015) Matthew T Maurano et al. NATURE GENETICS
- The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming
- (2015) Jens Durruthy-Durruthy et al. NATURE GENETICS
- Abundant contribution of short tandem repeats to gene expression variation in humans
- (2015) Melissa Gymrek et al. NATURE GENETICS
- The role of regulatory variation in complex traits and disease
- (2015) Frank W. Albert et al. NATURE REVIEWS GENETICS
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
- (2015) et al. SCIENCE
- Core promoter short tandem repeats as evolutionary switch codes for primate speciation
- (2014) Mina Ohadi et al. AMERICAN JOURNAL OF PRIMATOLOGY
- The landscape of human STR variation
- (2014) Thomas Willems et al. GENOME RESEARCH
- A promoter-level mammalian expression atlas
- (2014) NATURE
- Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
- (2014) Alexandre Fort et al. NATURE GENETICS
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
- (2014) Leighton J Core et al. NATURE GENETICS
- Pervasive transcription: illuminating the dark matter of bacterial transcriptomes
- (2014) Joseph T. Wade et al. NATURE REVIEWS MICROBIOLOGY
- deepTools: a flexible platform for exploring deep-sequencing data
- (2014) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Evidence for Evolutionary and Nonevolutionary Forces Shaping the Distribution of Human Genetic Variants near Transcription Start Sites
- (2014) Giovanni Scala et al. PLoS One
- Recombination initiation maps of individual human genomes
- (2014) F. Pratto et al. SCIENCE
- CTCF and Cohesin: Linking Gene Regulatory Elements with Their Targets
- (2013) Matthias Merkenschlager et al. CELL
- Transcription Start Site Evolution in Drosophila
- (2013) Bradley J. Main et al. MOLECULAR BIOLOGY AND EVOLUTION
- Endogenous retroviruses function as species-specific enhancer elements in the placenta
- (2013) Edward B Chuong et al. NATURE GENETICS
- Meiotic recombination in mammals: localization and regulation
- (2013) Frédéric Baudat et al. NATURE REVIEWS GENETICS
- Microsatellite Tandem Repeats Are Abundant in Human Promoters and Are Associated with Regulatory Elements
- (2013) Sterling Sawaya et al. PLoS One
- Transposable element recruitments in the mammalian placenta: impacts and mechanisms
- (2012) D. Emera et al. Briefings in Functional Genomics
- Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- (2012) C. Cheng et al. GENOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Metazoan promoters: emerging characteristics and insights into transcriptional regulation
- (2012) Boris Lenhard et al. NATURE REVIEWS GENETICS
- FastML: a web server for probabilistic reconstruction of ancestral sequences
- (2012) H. Ashkenazy et al. NUCLEIC ACIDS RESEARCH
- ENCODE Data in the UCSC Genome Browser: year 5 update
- (2012) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions
- (2012) L. D. Ward et al. SCIENCE
- Primate CpG Islands Are Maintained by Heterogeneous Evolutionary Regimes Involving Minimal Selection
- (2011) Netta Mendelson Cohen et al. CELL
- Unamplified cap analysis of gene expression on a single-molecule sequencer
- (2011) M. Kanamori-Katayama et al. GENOME RESEARCH
- The Reality of Pervasive Transcription
- (2011) Michael B. Clark et al. PLOS BIOLOGY
- Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
- (2011) A. P. Jason de Koning et al. PLoS Genetics
- Coordinated Genome-Wide Modifications within Proximal Promoter Cis-regulatory Elements during Vertebrate Evolution
- (2010) Ken Daigoro Yokoyama et al. Genome Biology and Evolution
- Every microsatellite is different: Intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome
- (2009) Kristin A. Eckert et al. MOLECULAR CARCINOGENESIS
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- Automated paleontology of repetitive DNA with REANNOTATE
- (2008) Vini Pereira BMC GENOMICS
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
- Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
- (2008) A. Loytynoja et al. SCIENCE
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