Transcriptome profile of Corynebacterium pseudotuberculosis in response to iron limitation

TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information

(2017) Shubhada R Kulkarni et al.   NUCLEIC ACIDS RESEARCH

PRODORIC2: the bacterial gene regulation database in 2018

(2017) Denitsa Eckweiler et al.   NUCLEIC ACIDS RESEARCH

Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli

(2017) Godefroid Charbon et al.   PLoS Genetics

WhiB4 Regulates the PE/PPE Gene Family and is Essential for Virulence of Mycobacterium marinum

(2017) Jing Wu et al.   Scientific Reports

Iron-dependent reconfiguration of the proteome underlies the intracellular lifestyle of Brucella abortus

(2017) M. S. Roset et al.   Scientific Reports

The obligate respiratory supercomplex from Actinobacteria

(2016) Wei-Chun Kao et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

An optimized protocol for generation and analysis of Ion Proton sequencing reads for RNA-Seq

(2016) Yongxian Yuan et al.   BMC GENOMICS

GIPSy: Genomic island prediction software

(2016) Siomar C. Soares et al.   JOURNAL OF BIOTECHNOLOGY

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The Role of DNA Restriction-Modification Systems in the Biology of Bacillus anthracis

(2016) Ramakrishnan Sitaraman   Frontiers in Microbiology

Recent advances in the Suf Fe–S cluster biogenesis pathway: Beyond the Proteobacteria

(2015) F. Wayne Outten   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

When Too Much ATP Is Bad for Protein Synthesis

(2015) Mauricio H. Pontes et al.   JOURNAL OF MOLECULAR BIOLOGY

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

(2015) Socorro Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Direct Evidence of Iron Uptake by the Gram-Positive Siderophore-Shuttle Mechanism without Iron Reduction

(2014) Tatsuya Fukushima et al.   ACS Chemical Biology

Cytochrome bd oxidase and bacterial tolerance to oxidative and nitrosative stress

(2014) Alessandro Giuffrè et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Spectroscopic evidence for a 5-coordinate oxygenic ligated high spin ferric heme moiety in the Neisseria meningitidis hemoglobin binding receptor

(2014) David Z. Mokry et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Hemophore HasA from Yersinia pestis (HasAyp) Coordinates Hemin with a Single Residue, Tyr75, and with Minimal Conformational Change

(2013) Ritesh Kumar et al.   BIOCHEMISTRY

nhmmer: DNA homology search with profile HMMs

(2013) T. J. Wheeler et al.   BIOINFORMATICS

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

(2013) Pavel S Novichkov et al.   BMC GENOMICS

Iron in Infection and Immunity

(2013) James E. Cassat et al.   Cell Host & Microbe

Analysis of Novel Iron-Regulated, Surface-Anchored Hemin-Binding Proteins in Corynebacterium diphtheriae

(2013) C. E. Allen et al.   JOURNAL OF BACTERIOLOGY

The Near-iron Transporter (NEAT) Domains of the Anthrax Hemophore IsdX2 Require a Critical Glutamine to Extract Heme from Methemoglobin

(2013) Erin S. Honsa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A role for the DtxR family of metalloregulators in gram-positive pathogenesis

(2013) A.T. Merchant et al.   Molecular Oral Microbiology

CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria

(2013) Sefa Kılıç et al.   NUCLEIC ACIDS RESEARCH

Aerobactin Synthesis Genes iucA and iucC Contribute to the Pathogenicity of Avian Pathogenic Escherichia coli O2 Strain E058

(2013) Jielu Ling et al.   PLoS One

Role and regulation of heme iron acquisition in gram-negative pathogens

(2013) Laura J. Runyen-Janecky   Frontiers in Cellular and Infection Microbiology

Density parameter estimation for finding clusters of homologous proteins—tracing actinobacterial pathogenicity lifestyles

(2012) Richard Röttger et al.   BIOINFORMATICS

Prediction of Genomic Islands in Three Bacterial Pathogens of Pneumonia

(2012) Feng-Biao Guo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Resuscitation-promoting Factors (Rpf): In Search of Inhibitors

(2012) Arseny S. Kaprelyants et al.   PROTEIN AND PEPTIDE LETTERS

Differential Function of Lip Residues in the Mechanism and Biology of an Anthrax Hemophore

(2012) MarCia T. Ekworomadu et al.   PLoS Pathogens

Control of Heme Homeostasis in Corynebacterium glutamicum by the Two-Component System HrrSA

(2011) J. Frunzke et al.   JOURNAL OF BACTERIOLOGY

Novel Hemin Binding Domains in the Corynebacterium diphtheriae HtaA Protein Interact with Hemoglobin and Are Critical for Heme Iron Utilization by HtaA

(2011) C. E. Allen et al.   JOURNAL OF BACTERIOLOGY

Genome-Wide Identification of In Vivo Binding Sites of GlxR, a Cyclic AMP Receptor Protein-Type Regulator in Corynebacterium glutamicum

(2011) K. Toyoda et al.   JOURNAL OF BACTERIOLOGY

Iron homeostasis and management of oxidative stress response in bacteria

(2011) Pierre Cornelis et al.   Metallomics

CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands

(2011) J. Pauling et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion

(2010) Eva Trost et al.   BMC GENOMICS

Iron and Porphyrin Trafficking in Heme Biogenesis

(2010) Iman J. Schultz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms

(2009) Jan Baumbach et al.   BMC Systems Biology

Nutritional immunity beyond iron: a role for manganese and zinc

(2009) Thomas E Kehl-Fie et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Resuscitation-promoting factors as lytic enzymes for bacterial growth and signaling

(2009) Bavesh Davandra Kana et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

HtaA Is an Iron-Regulated Hemin Binding Protein Involved in the Utilization of Heme Iron in Corynebacterium diphtheriae

(2009) C. E. Allen et al.   JOURNAL OF BACTERIOLOGY

The transcriptional regulatory repertoire of Corynebacterium glutamicum: Reconstruction of the network controlling pathways involved in lysine and glutamate production

(2009) Karina Brinkrolf et al.   JOURNAL OF BIOTECHNOLOGY

The resuscitation-promoting factors ofMycobacterium tuberculosisare required for virulence and resuscitation from dormancy but are collectively dispensable for growthin vitro

(2009) Bavesh D. Kana et al.   MOLECULAR MICROBIOLOGY

Studies on structural and functional divergence among seven WhiB proteins of Mycobacterium tuberculosis H37Rv

(2008) Md. Suhail Alam et al.   FEBS Journal

Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR

(2008) Britta Jungwirth et al.   FEMS MICROBIOLOGY LETTERS

ThewhcAgene plays a negative role in oxidative stress response ofCorynebacterium glutamicum

(2008) Woon-Woo Choi et al.   FEMS MICROBIOLOGY LETTERS