Type 1 Diabetes: an Association Between Autoimmunity, the Dynamics of Gut Amyloid-producing E. coli and Their Phages

HPViewer: sensitive and specific genotyping of human papillomavirus in metagenomic DNA

(2018) Yuhan Hao et al.   BIOINFORMATICS

IAPP and type 1 diabetes: implications for immunity, metabolism and islet transplants

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Parkinson’s disease and bacteriophages as its overlooked contributors

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The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

(2018) Tommi Vatanen et al.   NATURE

Temporal development of the gut microbiome in early childhood from the TEDDY study

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Correction for Zhao et al., Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

(2018)   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phages and immunomodulation

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metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

The Influence of the Microbiome on Type 1 Diabetes

(2017) Alexandra Paun et al.   JOURNAL OF IMMUNOLOGY

Islet amyloid in recent-onset type 1 diabetes—the DiViD study

(2017) Gunilla T. Westermark et al.   UPSALA JOURNAL OF MEDICAL SCIENCES

The role of microbial amyloid in neurodegeneration

(2017) Robert P. Friedland et al.   PLoS Pathogens

Bacterial amyloid curli acts as a carrier for DNA to elicit an autoimmune response via TLR2 and TLR9

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Bacteriophages as potential new mammalian pathogens

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Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

(2016) Tommi Vatanen et al.   CELL

The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

(2016) Aleksandar D. Kostic et al.   Cell Host & Microbe

Gut Microbiota Drive Autoimmune Arthritis by Promoting Differentiation and Migration of Peyer’s Patch T Follicular Helper Cells

(2016) Fei Teng et al.   IMMUNITY

Environmental risk factors for type 1 diabetes

(2016) Marian Rewers et al.   LANCET

Mammalian prions and their wider relevance in neurodegenerative diseases

(2016) John Collinge   NATURE

Viral infections in type 1 diabetes mellitus — why the β cells?

(2016) Anne Op de Beeck et al.   Nature Reviews Endocrinology

Viruses in type 1 diabetes

(2016) Heikki Hyöty   PEDIATRIC DIABETES

Exposure to the Functional Bacterial Amyloid Protein Curli Enhances Alpha-Synuclein Aggregation in Aged Fischer 344 Rats and Caenorhabditis elegans

(2016) Shu G. Chen et al.   Scientific Reports

Fueling the Fire with Fibers: Bacterial Amyloids Promote Inflammatory Disorders

(2015) Caitlin N. Spaulding et al.   Cell Host & Microbe

Bacteriophage-mediated spread of bacterial virulence genes

(2015) José R Penadés et al.   CURRENT OPINION IN MICROBIOLOGY

Amyloid-DNA Composites of Bacterial Biofilms Stimulate Autoimmunity

(2015) Paul M. Gallo et al.   IMMUNITY

Congo Red Interactions with Curli-Producing E. coli and Native Curli Amyloid Fibers

(2015) Courtney Reichhardt et al.   PLoS One

Classification and quantification of bacteriophage taxa in human gut metagenomes

(2014) Alison S Waller et al.   ISME Journal

Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions

(2014) Arun M. Nanda et al.   JOURNAL OF BACTERIOLOGY

High Plasma Levels of Islet Amyloid Polypeptide in Young with New-Onset of Type 1 Diabetes Mellitus

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Bacteriophages: an underestimated role in human and animal health?

(2014) Marianne De Paepe et al.   Frontiers in Cellular and Infection Microbiology

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes

(2014) Austin G. Davis-Richardson et al.   Frontiers in Microbiology

Microbial amyloids – functions and interactions within the host

(2013) Kelly Schwartz et al.   CURRENT OPINION IN MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

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Toll-Like Receptor 2–Mediated Intestinal Injury and Enteric Tumor Necrosis Factor Receptor I Contribute to Liver Fibrosis in Mice

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Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

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Genome Characteristics of a Novel Phage from Bacillus thuringiensis Showing High Similarity with Phage from Bacillus cereus

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Nucleic acid-containing amyloid fibrils potently induce type I interferon and stimulate systemic autoimmunity

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Genetics of the HLA Region in the Prediction of Type 1 Diabetes

(2011) Janelle A. Noble et al.   Current Diabetes Reports

Islet Amyloid Polypeptide Is a Target Antigen for Diabetogenic CD4+ T Cells

(2011) T. Delong et al.   DIABETES

Islet Autoantibody Seroconversion in the DPT-1 Study: Justification for repeat screening throughout childhood

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Genetics and pathogenesis of type 1 diabetes: prospects for prevention and intervention

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High-Throughput Method for Rapid Induction of Prophages from Lysogens and Its Application in the Study of Shiga Toxin-Encoding Escherichia coli Strains

(2010) J. E. McDonald et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Toll-like receptors 1 and 2 cooperatively mediate immune responses to curli, a common amyloid from enterobacterial biofilms

(2010) Çagla Tükel et al.   CELLULAR MICROBIOLOGY

Etiology of Type 1 Diabetes

(2010) John A. Todd   IMMUNITY

QIIME allows analysis of high-throughput community sequencing data

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The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes

(2009) Jeffrey C Barrett et al.   NATURE GENETICS

The role of inflammation in insulitis and β-cell loss in type 1 diabetes

(2009) Décio L. Eizirik et al.   Nature Reviews Endocrinology

Effect of DNase and Antibiotics on Biofilm Characteristics

(2008) G. V. Tetz et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The "Perfect Storm" for Type 1 Diabetes: The Complex Interplay Between Intestinal Microbiota, Gut Permeability, and Mucosal Immunity

(2008) O. Vaarala et al.   DIABETES

Viral Trigger for Type 1 Diabetes: Pros and Cons

(2008) C. M. Filippi et al.   DIABETES

Interaction of probiotic Lactobacillus and Bifidobacterium strains with human intestinal epithelial cells: Adhesion properties, competition against enteropathogens and modulation of IL-8 production

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