Environment-dependent fitness gains can be driven by horizontal gene transfer of transporter-encoding genes

Ancestral Function and Diversification of a Horizontally Acquired Oomycete Carboxylic Acid Transporter

(2018) Fiona R Savory et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage

(2018) Carla Gonçalves et al.   eLife

Osmotrophy

(2018) Thomas A. Richards et al.   CURRENT BIOLOGY

Glycerol stress in S accharomyces cerevisiae : Cellular responses and evolved adaptations

(2017) Florian Mattenberger et al.   ENVIRONMENTAL MICROBIOLOGY

Functional horizontal gene transfer from bacteria to eukaryotes

(2017) Filip Husnik et al.   NATURE REVIEWS MICROBIOLOGY

Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves

(2016) Kathleen Sprouffske et al.   BMC BIOINFORMATICS

Dynamic Evolution of Nitric Oxide Detoxifying Flavohemoglobins, a Family of Single-Protein Metabolic Modules in Bacteria and Eukaryotes

(2016) Jennifer H. Wisecaver et al.   MOLECULAR BIOLOGY AND EVOLUTION

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

(2016) Joseph W. Spatafora et al.   MYCOLOGIA

Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides

(2016) William G. Alexander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Directed evolution of G protein-coupled receptors in yeast for higher functional production in eukaryotic expression hosts

(2016) Marco Schütz et al.   Scientific Reports

Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages

(2016) Charley G. P. McCarthy et al.   mSphere

Improved xylose uptake inSaccharomyces cerevisiaedue to directed evolution of galactose permease Gal2 for sugar co-consumption

(2015) O. Reznicek et al.   JOURNAL OF APPLIED MICROBIOLOGY

Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine Yeasts

(2015) Souhir Marsit et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Role of Horizontal Gene Transfer in the Evolution of the Oomycetes

(2015) Fiona Savory et al.   PLoS Pathogens

Fungal metabolic gene clusters—caravans traveling across genomes and environments

(2015) Jennifer H. Wisecaver et al.   Frontiers in Microbiology

Horizontal Gene Transfer in Eukaryotic Plant Pathogens

(2014) Darren Soanes et al.   Annual Review of Phytopathology

The Secreted Proteins of Achlya hypogyna and Thraustotheca clavata Identify the Ancestral Oomycete Secretome and Reveal Gene Acquisitions by Horizontal Gene Transfer

(2014) Ian Misner et al.   Genome Biology and Evolution

Opt2 mediates the exposure of phospholipids during cellular adaptation to altered lipid asymmetry

(2014) S. Yamauchi et al.   JOURNAL OF CELL SCIENCE

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple recent horizontal transfers of a large genomic region in cheese making fungi

(2014) Kevin Cheeseman et al.   Nature Communications

The Evolution of Fungal Metabolic Pathways

(2014) Jennifer H. Wisecaver et al.   PLoS Genetics

Antibacterial gene transfer across the tree of life

(2014) Jason A Metcalf et al.   eLife

opm: an R package for analysing OmniLog(R) phenotype microarray data

(2013) L. A. I. Vaas et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Horizontal gene transfer in osmotrophs: playing with public goods

(2013) Thomas A. Richards et al.   NATURE REVIEWS MICROBIOLOGY

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance

(2013) Benjamin D. Heavner et al.   Database-The Journal of Biological Databases and Curation

Extensive Intra-Kingdom Horizontal Gene Transfer Converging on a Fungal Fructose Transporter Gene

(2013) Marco A. Coelho et al.   PLoS Genetics

Recurrent Horizontal Transfer of Bacterial Toxin Genes to Eukaryotes

(2012) Y. Moran et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

(2011) Adam Monier et al.   ENVIRONMENTAL MICROBIOLOGY

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

(2011) O. Popa et al.   GENOME RESEARCH

Multiple Horizontal Gene Transfers of Ammonium Transporters/Ammonia Permeases from Prokaryotes to Eukaryotes: Toward a New Functional and Evolutionary Classification

(2011) T. R. McDonald et al.   MOLECULAR BIOLOGY AND EVOLUTION

Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes

(2011) T. A. Richards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Horizontal Transfer of a Large and Highly Toxic Secondary Metabolic Gene Cluster between Fungi

(2010) Jason C. Slot et al.   CURRENT BIOLOGY

The Mixed Lineage Nature of Nitrogen Transport and Assimilation in Marine Eukaryotic Phytoplankton: A Case Study of Micromonas

(2010) Sarah M. McDonald et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer

(2010) O. Cohen et al.   MOLECULAR BIOLOGY AND EVOLUTION

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function

(2010) J. A. Cotton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Phylogenomic Analysis Demonstrates a Pattern of Rare and Ancient Horizontal Gene Transfer between Plants and Fungi

(2009) T. A. Richards et al.   PLANT CELL

Acquisition of prokaryotic genes by fungal genomes

(2009) Marina Marcet-Houben et al.   TRENDS IN GENETICS

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

Evolution of the cutinase gene family: Evidence for lateral gene transfer of a candidate Phytophthora virulence factor

(2007) Lassaad Belbahri et al.   GENE

Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years

(2007) M. J. Lercher et al.   MOLECULAR BIOLOGY AND EVOLUTION