Microbial species delineation using whole genome sequences

A System to Automatically Classify and Name Any Individual Genome-Sequenced Organism Independently of Current Biological Classification and Nomenclature

(2014) Haitham Marakeby et al.   PLoS One

Accurate and universal delineation of prokaryotic species

(2013) Daniel R Mende et al.   NATURE METHODS

Description of Bacillus toyonensis sp. nov., a novel species of the Bacillus cereus group, and pairwise genome comparisons of the species of the group by means of ANI calculations

(2013) Guillermo Jiménez et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

FSL J1-208, a Virulent Uncommon Phylogenetic Lineage IV Listeria monocytogenes Strain with a Small Chromosome Size and a Putative Virulence Plasmid Carrying Internalin-Like Genes

(2012) Henk C. den Bakker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

International Committee on Systematics of Prokaryotes * XIIth International (IUMS) Congress of Microbiology and Applied Bacteriology: Minutes of the meetings, 3, 4, 5 and 7 August 2008, Istanbul, Turkey

(2011) D. P. Labeda et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Molecular Insights intoBurkholderia pseudomalleiandBurkholderia malleiPathogenesis

(2010) Edouard E. Galyov et al.   Annual Review of Microbiology

Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements

(2010) Liliana Losada et al.   Genome Biology and Evolution

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream

(2009) Nikos C Kyrpides   NATURE BIOTECHNOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH