Transcriptome driven characterization of curly- and smooth-leafed endives reveals molecular differences in the sesquiterpenoid pathway

Lactucopicrin potentiates neuritogenesis and neurotrophic effects by regulating Ca 2+ /CaMKII/ATF1 signaling pathway

(2017) Ramu Venkatesan et al.   JOURNAL OF ETHNOPHARMACOLOGY

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

(2017) Hélène Badouin et al.   NATURE

Discovery of germacrene A synthases in Barnadesia spinosa: The first committed step in sesquiterpene lactone biosynthesis in the basal member of the Asteraceae

(2016) Trinh-Don Nguyen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Perception of bitterness, sweetness and liking of different genotypes of lettuce

(2016) M. Chadwick et al.   FOOD CHEMISTRY

The impact of sesquiterpene lactones and phenolics on sensory attributes: An investigation of a curly endive and escarole germplasm collection

(2016) L. Filippo D’Antuono et al.   FOOD CHEMISTRY

Influence of cultivation sites on sterol, nitrate, total phenolic contents and antioxidant activity in endive and stem chicory edible products

(2016) Francesca D’Acunzo et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCES AND NUTRITION

Structural and Sensory Characterization of Novel Sesquiterpene Lactones from Iceberg Lettuce

(2016) Franziska Mai et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Insights into the Sesquiterpenoid Pathway by Metabolic Profiling and De novo Transcriptome Assembly of Stem-Chicory (Cichorium intybus Cultigroup “Catalogna”)

(2016) Giulio Testone et al.   Frontiers in Plant Science

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Flowering time regulation in crops — what did we learn from Arabidopsis?

(2015) Martina Blümel et al.   CURRENT OPINION IN BIOTECHNOLOGY

Exploration of genetic diversity within Cichorium endivia and Cichorium intybus with focus on the gene pool of industrial chicory

(2015) P. Raulier et al.   GENETIC RESOURCES AND CROP EVOLUTION

Variation of sesquiterpene lactones and phenolics in chicory and endive germplasm

(2015) Federico Ferioli et al.   JOURNAL OF FOOD COMPOSITION AND ANALYSIS

Comparative genomics in the Asteraceae reveals little evidence for parallel evolutionary change in invasive taxa

(2015) Kathryn A. Hodgins et al.   MOLECULAR ECOLOGY

Accumulation of cynaropicrin in globe artichoke and localization of enzymes involved in its biosynthesis

(2015) K. Eljounaidi et al.   PLANT SCIENCE

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Density-Dependent Interference of Aphids with Caterpillar-Induced Defenses in Arabidopsis: Involvement of Phytohormones and Transcription Factors

(2014) Anneke Kroes et al.   PLANT AND CELL PHYSIOLOGY

Regulation of Specialized Metabolism by WRKY Transcription Factors

(2014) Craig Schluttenhofer et al.   PLANT PHYSIOLOGY

Sesquiterpene lactones: Adverse health effects and toxicity mechanisms

(2013) M. Helena R. Amorim et al.   CRITICAL REVIEWS IN TOXICOLOGY

Cichorium intybus: Traditional Uses, Phytochemistry, Pharmacology, and Toxicology

(2013) Renée A. Street et al.   Evidence-based Complementary and Alternative Medicine

Intra- and interspecific chromosome polymorphisms in cultivated Cichorium L. species (Asteraceae)

(2013) Ebenézer C.S. Bernardes et al.   GENETICS AND MOLECULAR BIOLOGY

Sesquiterpenoids Lactones: Benefits to Plants and People

(2013) Martin Chadwick et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives

(2013) Kathryn A. Hodgins et al.   Molecular Ecology Resources

New reports of nuclear DNA content for 407 vascular plant taxa from the United States

(2012) Chengke Bai et al.   ANNALS OF BOTANY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Structure and Dynamics of the Isoprenoid Pathway Network

(2012) Eva Vranová et al.   Molecular Plant

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

ArabidopsisMYC2 Interacts with DELLA Proteins in Regulating Sesquiterpene Synthase Gene Expression

(2012) Gao-Jie Hong et al.   PLANT CELL

Lettuce Costunolide Synthase (CYP71BL2) and Its Homolog (CYP71BL1) from Sunflower Catalyze Distinct Regio- and Stereoselective Hydroxylations in Sesquiterpene Lactone Metabolism

(2011) Nobuhiro Ikezawa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The major volatile organic compound emitted from Arabidopsis thaliana flowers, the sesquiterpene (E)-β-caryophyllene, is a defense against a bacterial pathogen

(2011) Mengsu Huang et al.   NEW PHYTOLOGIST

Reconstitution of the Costunolide Biosynthetic Pathway in Yeast and Nicotiana benthamiana

(2011) Qing Liu et al.   PLoS One

Biochemical Conservation and Evolution of Germacrene A Oxidase in Asteraceae

(2010) Don Trinh Nguyen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Development of SSR markers and construction of a consensus genetic map for chicory (Cichorium intybus L.)

(2010) T. Cadalen et al.   MOLECULAR BREEDING

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH