The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Validating Genome-Wide Association Candidates Controlling Quantitative Variation in Nodulation

(2017) Shaun J. Curtin et al.   PLANT PHYSIOLOGY

Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae

(2016) Michael S. Barker et al.   AMERICAN JOURNAL OF BOTANY

Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules

(2016) Baptiste Mayjonade et al.   BIOTECHNIQUES

Ancestors of modern plant crops

(2016) Jérôme Salse   CURRENT OPINION IN PLANT BIOLOGY

Molecular basis of the high-palmitic acid trait in sunflower seed oil

(2016) B. Pérez-Vich et al.   MOLECULAR BREEDING

Mapping quantitative trait loci controlling oil content, oleic acid and linoleic acid content in sunflower (Helianthus annuus L.)

(2016) Ameena Premnath et al.   MOLECULAR BREEDING

The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny

(2016) Davide Scaglione et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

(2015) Konstantin Berlin et al.   NATURE BIOTECHNOLOGY

Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives

(2015) Gregory J. Baute et al.   NEW PHYTOLOGIST

FLOR-ID: an interactive database of flowering-time gene networks inArabidopsis thaliana

(2015) Frédéric Bouché et al.   NUCLEIC ACIDS RESEARCH

Translational genomics for plant breeding with the genome sequence explosion

(2015) Yang Jae Kang et al.   PLANT BIOTECHNOLOGY JOURNAL

Turning heads: The biology of solar tracking in sunflower

(2014) Joshua P. Vandenbrink et al.   PLANT SCIENCE

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Plant genome sequencing — applications for crop improvement

(2013) Marie E Bolger et al.   CURRENT OPINION IN BIOTECHNOLOGY

GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations

(2013) Gordon Gremme et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Involvement of phosphatidate phosphatase in the biosynthesis of triacylglycerols in Chlamydomonas reinhardtii

(2013) Xiao-dong Deng et al.   Journal of Zhejiang University-SCIENCE B

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

ShortStack: Comprehensive annotation and quantification of small RNA genes

(2013) M. J. Axtell   RNA

An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce

(2013) Maria José Truco et al.   G3-Genes Genomes Genetics

EggLib: processing, analysis and simulation tools for population genetics and genomics

(2012) Stéphane De Mita et al.   BMC GENETICS

The sunflower (Helianthus annuusL.) genome reflects a recent history of biased accumulation of transposable elements

(2012) S. Evan Staton et al.   PLANT JOURNAL

Genetic analysis of phytosterol content in sunflower seeds

(2012) Othmane Merah et al.   THEORETICAL AND APPLIED GENETICS

Evidence of selection on fatty acid biosynthetic genes during the evolution of cultivated sunflower

(2012) Mark A. Chapman et al.   THEORETICAL AND APPLIED GENETICS

Progress towards a reference genome for sunflower

(2011) N.C. Kane et al.   Botany

Evolution and Diversification of the CYC/TB1 Gene Family in Asteraceae--A Comparative Study in Gerbera (Mutisieae) and Sunflower (Heliantheae)

(2011) S. Tahtiharju et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic dissection of tocopherol and phytosterol in recombinant inbred lines of sunflower through quantitative trait locus analysis and the candidate gene approach

(2011) P. Haddadi et al.   MOLECULAR BREEDING

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Contributions of Flowering Time Genes to Sunflower Domestication and Improvement

(2010) B. K. Blackman et al.   GENETICS

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Improved criteria and comparative genomics tool provide new insights into grass paleogenomics

(2009) J. Salse et al.   BRIEFINGS IN BIOINFORMATICS

Crops and climate change: progress, trends, and challenges in simulating impacts and informing adaptation

(2009) A. J. Challinor et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fine-grained annotation and classification of de novo predicted LTR retrotransposons

(2009) Sascha Steinbiss et al.   NUCLEIC ACIDS RESEARCH

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Genome Annotation in Plants and Fungi: EuGene as a Model Platform

(2008) Sylvain Foissac et al.   Current Bioinformatics

MOLECULAR DEMOGRAPHIC HISTORY OF THE ANNUAL SUNFLOWERSHELIANTHUS ANNUUSANDH. PETIOLARIS-LARGE EFFECTIVE POPULATION SIZES AND RATES OF LONG-TERM GENE FLOW

(2008) Jared L. Strasburg et al.   EVOLUTION

QTL mapping of seed-quality traits in sunflower recombinant inbred lines under different water regimes

(2008) A. Ebrahimi et al.   GENOME

Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years

(2008) M. S. Barker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Prioritizing Climate Change Adaptation Needs for Food Security in 2030

(2008) D. B. Lobell et al.   SCIENCE