Forest Tree Microbiomes and Associated Fungal Endophytes: Functional Roles and Impact on Forest Health

Detection of foliar endophytes and their metabolites in Picea and Pinus seedling needles

(2018) D.R. McMullin et al.   Fungal Ecology

Resilience of Phialocephala fortinii s.l. – Acephala applanata communities – Effects of disturbance and strain introduction

(2018) Sophie Stroheker et al.   Fungal Ecology

Current understanding of the human microbiome

(2018) Jack A Gilbert et al.   NATURE MEDICINE

Ericoid plant species and Pinus sylvestris shape fungal communities in their roots and surrounding soil

(2018) Outi-Maaria Sietiö et al.   NEW PHYTOLOGIST

Both plant genotype and herbivory shape aspen endophyte communities

(2018) Benedicte Riber Albrectsen et al.   OECOLOGIA

Mycobiome analysis of asymptomatic and symptomatic Norway spruce trees naturally infected by the conifer pathogens Heterobasidion spp.

(2018) Andriy Kovalchuk et al.   Environmental Microbiology Reports

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

(2018) M. A. Cregger et al.   Microbiome

Tissue Microbiome of Norway Spruce Affected by Heterobasidion-Induced Wood Decay

(2018) Fei Ren et al.   MICROBIAL ECOLOGY

A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon

(2018) Aline B. M. Vaz et al.   Scientific Reports

Enhancement of Populus alba tolerance to Venturia tremulae upon inoculation with endophytes showing in vitro biocontrol potential

(2018) C. Martínez-Arias et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Diversity of foliar endophytic ascomycetes in the endemic Corsican pine forests

(2018) Adrien Taudière et al.   Fungal Ecology

The Endophytic Mycobiome of European Ash and Sycamore Maple Leaves – Geographic Patterns, Host Specificity and Influence of Ash Dieback

(2018) Markus Schlegel et al.   Frontiers in Microbiology

Communities of fungal endophytes in leaves of Fraxinus ornus are highly diverse

(2017) Mohammed Ibrahim et al.   Fungal Ecology

The dark septate endophytic fungus Phialocephala fortinii is a potential decomposer of soil organic compounds and a promoter of Asparagus officinalis growth

(2017) Surono et al.   Fungal Ecology

Natural Products of Picea Endophytes from the Acadian Forest

(2017) David R. McMullin et al.   JOURNAL OF NATURAL PRODUCTS

Host Genotype and Nitrogen Form Shape the Root Microbiome of Pinus radiata

(2017) Marta Gallart et al.   MICROBIAL ECOLOGY

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exposure to the leaf litter microbiome of healthy adults protects seedlings from pathogen damage

(2017) Natalie Christian et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions

(2017) Abu Bakar Siddique et al.   MycoKeys

Assignment of species rank to six reproductively isolated cryptic species of the Phialocephala fortinii s.l.-Acephala applanata species complex

(2017) Christoph R. Grünig et al.   MYCOLOGIA

Foliar fungi of Betula pendula: impact of tree species mixtures and assessment methods

(2017) Diem Nguyen et al.   Scientific Reports

Diversity of endophytic mycobiota of tropical tree Tectona grandis Linn.f.: Spatiotemporal and tissue type effects

(2017) Dheeraj K Singh et al.   Scientific Reports

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Dominant Tree Species and Soil Type Affect the Fungal Community Structure in a Boreal Peatland Forest

(2016) Hui Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Twenty-four years of Dutch Trig® application to control Dutch elm disease

(2016) Joeke Postma et al.   BIOCONTROL

Inhibition of phytopathogens by fungal root endophytes of Norway spruce

(2016) Eeva Terhonen et al.   BIOLOGICAL CONTROL

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

Giving back to the community: microbial mechanisms of plant-soil interactions

(2016) Sur Herrera Paredes et al.   FUNCTIONAL ECOLOGY

Production of antifungal and antiinsectan metabolites by the Picea endophyte Diaporthe maritima sp. nov.

(2016) Joey B. Tanney et al.   Fungal Biology

Dark septate endophytic fungi of native plants along an altitudinal gradient in the Brazilian Atlantic forest

(2016) Joice Andrade Bonfim et al.   Fungal Ecology

Do foliar fungal communities of Norway spruce shift along a tree species diversity gradient in mature European forests?

(2016) Diem Nguyen et al.   Fungal Ecology

Host associations and beta diversity of fungal endophyte communities in New Guinea rainforest trees

(2016) J. B. Vincent et al.   MOLECULAR ECOLOGY

Venturia orni sp. nov., a species distinct from Venturia fraxini, living in the leaves of Fraxinus ornus

(2016) Mohammed Ibrahim et al.   MYCOLOGICAL PROGRESS

New mutualistic fungal endophytes isolated from poplar roots display high metal tolerance

(2016) Laurence Lacercat-Didier et al.   MYCORRHIZA

Unearthing the roots of ectomycorrhizal symbioses

(2016) Francis Martin et al.   NATURE REVIEWS MICROBIOLOGY

Metagenome-wide association studies: fine-mining the microbiome

(2016) Jun Wang et al.   NATURE REVIEWS MICROBIOLOGY

Shifting from priming of salicylic acid- to jasmonic acid-regulated defences by Trichoderma protects tomato against the root knot nematode Meloidogyne incognita

(2016) Ainhoa Martínez-Medina et al.   NEW PHYTOLOGIST

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management

(2016) R. Poudel et al.   PHYTOPATHOLOGY

Spatial and temporal dynamics in the Phialocephala fortinii s.l. – Acephala applanata species complex (PAC)

(2016) Sophie Stroheker et al.   PLANT AND SOIL

Root Fungal Endophytes Enhance Heavy-Metal Stress Tolerance of Clethra barbinervis Growing Naturally at Mining Sites via Growth Enhancement, Promotion of Nutrient Uptake and Decrease of Heavy-Metal Concentration

(2016) Keiko Yamaji et al.   PLoS One

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Networking in the Plant Microbiome

(2016) Marcel G. A. van der Heijden et al.   PLOS BIOLOGY

The defensive role of foliar endophytic fungi for a South American tree

(2016) Marcia González-Teuber   AoB Plants

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System

(2016) Collin M. Timm et al.   Frontiers in Plant Science

Bioactive secondary metabolites with multiple activities from a fungal endophyte

(2016) Catherine W. Bogner et al.   Microbial Biotechnology

Unraveling the role of dark septate endophyte (DSE) colonizing maize (Zea mays) under cadmium stress: physiological, cytological and genic aspects

(2016) Jun-ling Wang et al.   Scientific Reports

An evolutionary ecology perspective to address forest pathology challenges of today and tomorrow

(2015) Marie-Laure Desprez-Loustau et al.   ANNALS OF FOREST SCIENCE

Nutritional niche overlap potentiates the use of endophytes in biocontrol of a tree disease

(2015) Kathrin Blumenstein et al.   BIOCONTROL

Greater than the sum of their parts: characterizing plant microbiomes at the community-level

(2015) Sarah L Lebeis   CURRENT OPINION IN PLANT BIOLOGY

Strong in vitro antagonism by elm xylem endophytes is not accompanied by temporally stable in planta protection against a vascular pathogen under field conditions

(2015) Juan A. Martín et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

The frequency of modification of Dothistroma pine needle blight severity by fungi within the native range

(2015) Mary Ridout et al.   FOREST ECOLOGY AND MANAGEMENT

Fungal endophytic communities on twigs of fast and slow growing Scots pine ( Pinus sylvestris L.) in northern Spain

(2015) Antonio V. Sanz-Ros et al.   Fungal Biology

The co-existence between DSE and AMF symbionts affects plant P pools through P mineralization and solubilization processes

(2015) I.F. Della Monica et al.   Fungal Ecology

Wild trees in the Amazon basin harbor a great diversity of beneficial endosymbiotic fungi: is this evidence of protective mutualism?

(2015) Romina Gazis et al.   Fungal Ecology

Changes in fungal community of Scots pine ( Pinus sylvestris ) needles along a latitudinal gradient in Sweden

(2015) Hanna Millberg et al.   Fungal Ecology

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Comparative analysis of BABA and Piriformospora indica mediated priming of defence-related genes in tomato against early blight

(2015) P. Roylawar et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Engineering Microbiomes to Improve Plant and Animal Health

(2015) U.G. Mueller et al.   TRENDS IN MICROBIOLOGY

Seven Ulmus minor clones tolerant to Ophiostoma novo-ulmi registered as forest reproductive material in Spain

(2015) JA Martín et al.   iForest-Biogeosciences and Forestry

Phenotype MicroArrays as a complementary tool to next generation sequencing for characterization of tree endophytes

(2015) Kathrin Blumenstein et al.   Frontiers in Microbiology

The Potential of Dark Septate Endophytes to Form Root Symbioses with Ectomycorrhizal and Ericoid Mycorrhizal Middle European Forest Plants

(2015) Tereza Lukešová et al.   PLoS One

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

(2015) Nicolas Delhomme et al.   PLoS One

Distribution of the foliar fungal endophyte Phialocephala scopiformis and its toxin in the crown of a mature white spruce tree as revealed by chemical and qPCR analyses

(2014) Samantha L. Frasz et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Seimatoric acid and colletonoic acid: Two new compounds from the endophytic fungi, Seimatosporium sp. and Colletotrichum sp.

(2014) Hidayat Hussain et al.   CHINESE CHEMICAL LETTERS

Endophytic fungi of Norway spruce roots in boreal pristine mire, drained peatland and mineral soil and their inhibitory effect on Heterobasidion parviporum in vitro

(2014) Eeva Terhonen et al.   Fungal Ecology

Griseofulvin-producing Xylaria endophytes of Pinus strobus and Vaccinium angustifolium: evidence for a conifer-understory species endophyte ecology

(2014) Susan N. Richardson et al.   Fungal Ecology

Forest Health in a Changing World

(2014) Marco Pautasso et al.   MICROBIAL ECOLOGY

Microbial genome-enabled insights into plant–microorganism interactions

(2014) David S. Guttman et al.   NATURE REVIEWS GENETICS

Diversity and Communities of Foliar Endophytic Fungi from Different Agroecosystems of Coffea arabica L. in Two Regions of Veracruz, Mexico

(2014) Aurora Saucedo-García et al.   PLoS One

Secret lifestyles of Neurospora crassa

(2014) Hsiao-Che Kuo et al.   Scientific Reports

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree

(2014) Luis C. Mejía et al.   Frontiers in Microbiology

Cryptic fungal infections: the hidden agenda of plant pathogens

(2014) Ioannis Stergiopoulos et al.   Frontiers in Plant Science

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Endophyte communities vary in the needles of Norway spruce clones

(2013) Tiina Rajala et al.   Fungal Biology

Fungal endophyte diversity and community patterns in healthy and yellowing leaves of Citrus limon

(2013) C. Douanla-Meli et al.   Fungal Ecology

Isolates of dark septate endophytes reduce metal uptake and improve physiology of Salix caprea L.

(2013) M. Likar et al.   PLANT AND SOIL

Comparative pathobiology of Heterobasidion annosum during challenge on Pinus sylvestris and Arabidopsis roots: an analysis of defensin gene expression in two pathosystems

(2013) Emad Jaber et al.   PLANTA

Resistance to Dutch Elm Disease Reduces Presence of Xylem Endophytic Fungi in Elms (Ulmus spp.)

(2013) Juan A. Martín et al.   PLoS One

Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)

(2013) Miklós Bálint et al.   PLoS One

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest

(2013) Hirokazu Toju et al.   PLoS One

Mitigation of antagonistic effects on plant growth due to root co-colonization by dark septate endophytes and ectomycorrhiza

(2013) Vanessa Reininger et al.   Environmental Microbiology Reports

Host and geographic structure of endophytic and endolichenic fungi at a continental scale

(2012) Jana M. U'Ren et al.   AMERICAN JOURNAL OF BOTANY

Endophytic bacterial community living in roots of healthy and ‘Candidatus Phytoplasma mali’-infected apple (Malus domestica, Borkh.) trees

(2012) Daniela Bulgari et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Can endophytic Arthrobotrys oligospora modulate accumulation of defence related biomolecules and induced systemic resistance in tomato (Lycopersicon esculentum Mill.) against root knot disease caused by Meloidogyne incognita

(2012) Udai B. Singh et al.   APPLIED SOIL ECOLOGY

Effectiveness of systemic resistance toward Aphis gossypii (Hom., Aphididae) as induced by combined applications of the endophytes Fusarium oxysporum Fo162 and Rhizobium etli G12

(2012) A. Martinuz et al.   BIOLOGICAL CONTROL

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

Do colonization by dark septate endophytes and elevated temperature affect pathogenicity of oomycetes?

(2012) Christoph Tellenbach et al.   FEMS MICROBIOLOGY ECOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Inhibition of Phytophthora species by secondary metabolites produced by the dark septate endophyte Phialocephala europaea

(2012) Christoph Tellenbach et al.   Fungal Ecology

Neighboring Deschampsia flexuosa and Trientalis europaea harbor contrasting root fungal endophytic communities

(2012) Mysore V. Tejesvi et al.   MYCORRHIZA

The effects of fungal root endophytes on plant growth: a meta-analysis

(2012) Michael S. Mayerhofer et al.   MYCORRHIZA

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

The contribution of foliar endophytes to quantitative resistance toMelampsorarust

(2012) Anil K. H. Raghavendra et al.   NEW PHYTOLOGIST

Methylobacterium-Induced Endophyte Community Changes Correspond with Protection of Plants against Pathogen Attack

(2012) Pavlo Ardanov et al.   PLoS One

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Restructuring of Endophytic Bacterial Communities in Grapevine Yellows-Diseased and Recovered Vitis vinifera L. Plants

(2011) Daniela Bulgari et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Host species and strain combination determine growth reduction of spruce and birch seedlings colonized by root-associated dark septate endophytes

(2011) Vanessa Reininger et al.   ENVIRONMENTAL MICROBIOLOGY

Negative effects on survival and performance of Norway spruce seedlings colonized by dark septate root endophytes are primarily isolate-dependent

(2011) Christoph Tellenbach et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of foliar endophytes in wind-fallen Picea abies trees

(2011) Ondřej Koukol et al.   FUNGAL DIVERSITY

Host Associations Between Fungal Root Endophytes and Boreal Trees

(2011) Gavin Kernaghan et al.   MICROBIAL ECOLOGY

Diverse Helotiales associated with the roots of three species of Arctic Ericaceae provide no evidence for host specificity

(2011) John F. Walker et al.   NEW PHYTOLOGIST

A meta-analysis of plant responses to dark septate root endophytes

(2011) K. K. Newsham   NEW PHYTOLOGIST

Antifungal metabolites from fungal endophytes of Pinus strobus

(2011) Mark W. Sumarah et al.   PHYTOCHEMISTRY

Climate change, plant diseases and food security: an overview

(2011) S. Chakraborty et al.   PLANT PATHOLOGY

Managing the ecology of foliar pathogens: ecological tolerance in crops

(2010) A.C. Newton et al.   ANNALS OF APPLIED BIOLOGY

Suitability of Quantitative Real-Time PCR To Estimate the Biomass of Fungal Root Endophytes

(2010) C. Tellenbach et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa

(2010) Nicole Weinert et al.   FEMS MICROBIOLOGY ECOLOGY

Root endophytes along a primary succession gradient in northern Finland

(2010) M. V. Tejesvi et al.   FUNGAL DIVERSITY

Defensive mutualism between plants and endophytic fungi?

(2010) Kari Saikkonen et al.   FUNGAL DIVERSITY

Diversity of fungal endophytes in leaves and stems of wild rubber trees (Hevea brasiliensis) in Peru

(2010) Romina Gazis et al.   Fungal Ecology

No biogeographical pattern for a root-associated fungal species complex

(2010) Valentin Queloz et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Host preferences and differential contributions of deciduous tree species shape mycorrhizal species richness in a mixed Central European forest

(2010) Christa Lang et al.   MYCORRHIZA

Co-existing ericaceous plant species in a subarctic mire community share fungal root endophytes

(2009) Rasmus Kjøller et al.   Fungal Ecology

Microsatellite size homoplasies and null alleles do not affect species diagnosis and population genetic analysis in a fungal species complex

(2009) V. QUELOZ et al.   Molecular Ecology Resources

Microbiological control of soil-borne phytopathogenic fungi with special emphasis on wilt-inducingFusarium oxysporum

(2009) Claude Alabouvette et al.   NEW PHYTOLOGIST

Induced resistance to pests and pathogens in trees

(2009) Alieta Eyles et al.   NEW PHYTOLOGIST

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

No evidence that nitrogen enrichment affect fungal communities of Vaccinium roots in two contrasting boreal forest types

(2009) Takahide A. Ishida et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biogeographic and phylogenetic patterns in diversity of liverwort-associated endophytes

(2008) E. C. Davis et al.   AMERICAN JOURNAL OF BOTANY

Endophytic fungi as biocontrol agents of Theobroma cacao pathogens

(2008) Luis C. Mejía et al.   BIOLOGICAL CONTROL

Dark septate endophytes (DSE) of the Phialocephala fortinii s.l. – Acephala applanata species complex in tree roots: classification, population biology, and ecology

(2008) Christoph R. Grünig et al.   Botany

Fungal root endophytes from natural vegetation in Mediterranean environments with special reference to Fusarium spp

(2008) Jose G. Maciá-Vicente et al.   FEMS MICROBIOLOGY ECOLOGY

Endophyte-mediated resistance against white pine blister rust in Pinus monticola

(2008) Rebecca J. Ganley et al.   FOREST ECOLOGY AND MANAGEMENT

Stress tolerance in plants via habitat-adapted symbiosis

(2008) Rusty J Rodriguez et al.   ISME Journal

Effect of a Rugulosin-producing Endophyte in Picea glauca on Choristoneura fumiferana

(2008) J. David Miller et al.   JOURNAL OF CHEMICAL ECOLOGY

More than 400 million years of evolution and some plants still can't make it on their own: plant stress tolerance via fungal symbiosis

(2008) R. Rodriguez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Seasonal and Tissue Age Influences on Endophytic Fungi ofPinus tabulaeformis(Pinaceae) in the Dongling Mountains, Beijing

(2008) Liang-Dong Guo et al.   Journal of Integrative Plant Biology

Characterization of Polyketide Metabolites from Foliar Endophytes ofPicea glauca

(2008) Mark W. Sumarah et al.   JOURNAL OF NATURAL PRODUCTS

Isolation and characterization of microsatellite markers for the tree-root endophytesPhialocephala subalpinaandPhialocephala fortiniis.s.

(2008) VALENTIN QUELOZ et al.   Molecular Ecology Resources

Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment

(2008) Keerthi Mandyam et al.   MYCORRHIZA

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY

Salt tolerance of barley induced by the root endophytePiriformospora indicais associated with a strong increase in antioxidants

(2008) Helmut Baltruschat et al.   NEW PHYTOLOGIST

Spread and persistence of a rugulosin-producing endophyte in Picea glauca seedlings

(2008) Mark W. Sumarah et al.