The Endophytic Mycobiome of European Ash and Sycamore Maple Leaves – Geographic Patterns, Host Specificity and Influence of Ash Dieback

Do higher summer temperatures restrict the dissemination of Hymenoscyphus fraxineus in France?

(2018) M. Grosdidier et al.   FOREST PATHOLOGY

Fungal communities associated with species of Fraxinus tolerant to ash dieback, and their potential for biological control

(2018) Chatchai Kosawang et al.   Fungal Biology

The influence of genetics, defensive chemistry and the fungal microbiome on disease outcome in whitebark pine trees

(2018) Lorinda S. Bullington et al.   MOLECULAR PLANT PATHOLOGY

The use of ascospores of the dieback fungus Hymenoscyphus fraxineus for infection assays reveals a significant period of biotrophic interaction in penetrated ash cells

(2018) J. W. Mansfield et al.   PLANT PATHOLOGY

Direct evidence of Hymenoscyphus fraxineus infection pathway through the petiole-shoot junction

(2017) Z. Haňáčková et al.   FOREST PATHOLOGY

Communities of fungal endophytes in leaves of Fraxinus ornus are highly diverse

(2017) Mohammed Ibrahim et al.   Fungal Ecology

A signature of tree health? Shifts in the microbiome and the ecological drivers of horse chestnut bleeding canker disease

(2017) Britt Koskella et al.   NEW PHYTOLOGIST

Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing

(2017) Luisa W. Hugerth et al.   Frontiers in Microbiology

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems

(2017) Joanne B. Emerson et al.   Microbiome

Novel soil-inhabiting clades fill gaps in the fungal tree of life

(2017) Leho Tedersoo et al.   Microbiome

What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions

(2017) Abu Bakar Siddique et al.   MycoKeys

Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing

(2016) D. Lee Taylor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungi on stems and twigs in initial and advanced stages of dieback of European ash (Fraxinus excelsior) in Poland

(2016) Tadeusz Kowalski et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

The susceptibility of Asian, European and North American Fraxinus species to the ash dieback pathogen Hymenoscyphus fraxineus reflects their phylogenetic history

(2016) Lene R. Nielsen et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

A new forest pest in Europe: a review of Emerald ash borer (Agrilus planipennis ) invasion

(2016) V. Valenta et al.   JOURNAL OF APPLIED ENTOMOLOGY

Venturia orni sp. nov., a species distinct from Venturia fraxini, living in the leaves of Fraxinus ornus

(2016) Mohammed Ibrahim et al.   MYCOLOGICAL PROGRESS

Genome sequence and genetic diversity of European ash trees

(2016) Elizabeth S. A. Sollars et al.   NATURE

Fungal diversity and seasonal succession in ash leaves infected by the invasive ascomycete Hymenoscyphus fraxineus

(2016) Hugh Cross et al.   NEW PHYTOLOGIST

Ash dieback due toHymenoscyphus fraxineus: what can be learnt from evolutionary ecology?

(2016) J. Landolt et al.   PLANT PATHOLOGY

All that glitters is not Ramularia

(2016) S.I.R. Videira et al.   STUDIES IN MYCOLOGY

Fungal identification biases in microbiome projects

(2016) Leho Tedersoo et al.   Environmental Microbiology Reports

Climate change and the ash dieback crisis

(2016) Eric Goberville et al.   Scientific Reports

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Molecular markers for tolerance of European ash (Fraxinus excelsior) to dieback disease identified using Associative Transcriptomics

(2016) Andrea L. Harper et al.   Scientific Reports

Friend or foe? Biological and ecological traits of the European ash dieback pathogen Hymenoscyphus fraxineus in its native environment

(2016) Michelle Cleary et al.   Scientific Reports

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

First definite report of natural infection ofFraxinus ornusbyHymenoscyphus fraxineus

(2015) T. Kirisits et al.   FOREST PATHOLOGY

Barcoding the kingdom Plantae: new PCR primers forITSregions of plants with improved universality and specificity

(2015) Tao Cheng et al.   Molecular Ecology Resources

Unseen, but still present in Czechia: Hymenoscyphus albidus detected by real-time PCR, but not by intensive sampling

(2015) Ondřej Koukol et al.   MYCOLOGICAL PROGRESS

Fungal endophytes: modifiers of plant disease

(2015) Posy E. Busby et al.   PLANT MOLECULAR BIOLOGY

Detection of Airborne Inoculum of Hymenoscyphus fraxineus and H. albidus during Seasonal Fluctuations Associated with Absence of Apothecia

(2015) Milon Dvorak et al.   Forests

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Population structure of the invasive forest pathogenHymenoscyphus pseudoalbidus

(2014) Andrin Gross et al.   MOLECULAR ECOLOGY

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

The ash dieback crisis: genetic variation in resistance can prove a long-term solution

(2014) L. V. McKinney et al.   PLANT PATHOLOGY

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

Hymenoscyphus fraxineus, the correct scientific name for the fungus causing ash dieback in europe

(2014) Hans-Otto Baral et al.   IMA Fungus

Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungi in foliage and shoots ofFraxinus excelsiorin eastern Ukraine: a first report onHymenoscyphus pseudoalbidus

(2013) K. Davydenko et al.   FOREST PATHOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Hymenoscyphus pseudoalbidus, the causal agent of European ash dieback

(2013) Andrin Gross et al.   MOLECULAR PLANT PATHOLOGY

Hymenoscyphus pseudoalbidus, the correct name for Lambertella albida reported from Japan

(2013) Yan-Jie Zhao et al.   MYCOTAXON

Light and scanning electron microscopy studies of the early infection stages ofHymenoscyphus pseudoalbidusonFraxinus excelsior

(2013) M. R. Cleary et al.   PLANT PATHOLOGY

Resistance to Dutch Elm Disease Reduces Presence of Xylem Endophytic Fungi in Elms (Ulmus spp.)

(2013) Juan A. Martín et al.   PLoS One

Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: Is there a universal solution?

(2013) Petr Kohout et al.   SOIL BIOLOGY & BIOCHEMISTRY

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

European ash (Fraxinus excelsior) dieback – A conservation biology challenge

(2012) Marco Pautasso et al.   BIOLOGICAL CONSERVATION

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Rapid invasion by an aggressive pathogenic fungus (Hymenoscyphus pseudoalbidus) replaces a native decomposer (Hymenoscyphus albidus): a case of local cryptic extinction?

(2012) L.V. McKinney et al.   Fungal Ecology

Spatio-temporal dynamics of endophyte diversity in the canopy of European ash (Fraxinus excelsior)

(2012) Almut Scholtysik et al.   MYCOLOGICAL PROGRESS

Estimating Coextinction Risks from Epidemic Tree Death: Affiliate Lichen Communities among Diseased Host Tree Populations of Fraxinus excelsior

(2012) Mari T. Jönsson et al.   PLoS One

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

A review of European ash (Fraxinus excelsior L.): implications for silviculture

(2011) D. Dobrowolska et al.   FORESTRY

Induced Systemic Resistance and Plant Responses to Fungal Biocontrol Agents

(2010) Michal Shoresh et al.   Annual Review of Phytopathology

Cryptic speciation in Hymenoscyphus albidus

(2010) V. Queloz et al.   FOREST PATHOLOGY

Presence of natural genetic resistance in Fraxinus excelsior (Oleraceae) to Chalara fraxinea (Ascomycota): an emerging infectious disease

(2010) L V McKinney et al.   HEREDITY

Impacts of biodiversity on the emergence and transmission of infectious diseases

(2010) Felicia Keesing et al.   NATURE

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Independent filtering increases detection power for high-throughput experiments

(2010) R. Bourgon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Quantitative effects of position and type of single mismatch on single base primer extension

(2009) Jer-Horng Wu et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Induced resistance to pests and pathogens in trees

(2009) Alieta Eyles et al.   NEW PHYTOLOGIST

The sixth mass coextinction: are most endangered species parasites and mutualists?

(2009) R. R. Dunn et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Occurrence and pathogenicity of fungi in necrotic and non-symptomatic shoots of declining common ash (Fraxinus excelsior) in Sweden

(2008) Remigijus Bakys et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

More than 400 million years of evolution and some plants still can't make it on their own: plant stress tolerance via fungal symbiosis

(2008) R. Rodriguez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Host specificity and speciation of Mycosphaerella and Teratosphaeria species associated with leaf spots of Proteaceae

(2008) P.W. Crous et al.   PERSOONIA

Investigations concerning the role ofChalara fraxineain decliningFraxinus excelsior

(2008) R. Bakys et al.   PLANT PATHOLOGY

Homage to Linnaeus: How many parasites? How many hosts?

(2008) A. Dobson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA