Mangrove Sediment Microbiome: Adaptive Microbial Assemblages and Their Routed Biogeochemical Processes in Yunxiao Mangrove National Nature Reserve, China

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Linking Genes to Microbial Biogeochemical Cycling: Lessons from Arsenic

(2017) Yong-Guan Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

(2016) Hanin Alzubaidy et al.   GENE

Changing bacterial profile of Sundarbans, the world heritage mangrove: Impact of anthropogenic interventions

(2015) Arpita Chakraborty et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

Spatiotemporal Analysis of Bacterial Diversity in Sediments of Sundarbans Using Parallel 16S rRNA Gene Tag Sequencing

(2014) Pijush Basak et al.   MICROBIAL ECOLOGY

Diversity of Bacterial Communities Along a Petroleum Contamination Gradient in Desert Soils

(2014) Raeid M. M. Abed et al.   MICROBIAL ECOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Polysulfides as Intermediates in the Oxidation of Sulfide to Sulfate by Beggiatoa spp.

(2013) Jasmine S. Berg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of bacterial communities in soil and sediment of a created riverine wetland complex using high-throughput 16S rRNA amplicon sequencing

(2013) Teele Ligi et al.   ECOLOGICAL ENGINEERING

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves

(2012) Shijie Bai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Draft Genome Sequence of the Sulfur-Oxidizing Bacterium "Candidatus Sulfurovum sediminum" AR, Which Belongs to the Epsilonproteobacteria

(2012) S.-J. Park et al.   JOURNAL OF BACTERIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

(2012) Fernando Dini Andreote et al.   PLoS One

Pole-to-pole biogeography of surface and deep marine bacterial communities

(2012) J.-F. Ghiglione et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrogen-limited mangrove ecosystems conserve N through dissimilatory nitrate reduction to ammonium

(2012) Sheryl Oliveira Fernandes et al.   Scientific Reports

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Ultrastructure of the Denitrifying Methanotroph "Candidatus Methylomirabilis oxyfera," a Novel Polygon-Shaped Bacterium

(2011) M. L. Wu et al.   JOURNAL OF BACTERIOLOGY

Denitrification prevails over anammox in tropical mangrove sediments (Goa, India)

(2011) Sheryl Oliveira Fernandes et al.   MARINE ENVIRONMENTAL RESEARCH

Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function

(2011) John A. Fuerst et al.   NATURE REVIEWS MICROBIOLOGY

The bacterial diversity in a Brazilian non-disturbed mangrove sediment

(2010) Armando C. F. Dias et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia

(2010) Newton C.M. Gomes et al.   FEMS MICROBIOLOGY ECOLOGY

Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium “Candidatus Nitrospira defluvii”: Identification of a catalytically important amino acid residue

(2010) Julius Kostan et al.   JOURNAL OF STRUCTURAL BIOLOGY

Growth- and substrate-dependent transcription of formate dehydrogenase and hydrogenase coding genes in Syntrophobacter fumaroxidans and Methanospirillum hungatei

(2010) P. Worm et al.   MICROBIOLOGY-SGM

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biocomplexity in Mangrove Ecosystems

(2009) I.C. Feller et al.   Annual Review of Marine Science

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and biotechnological potential of culturable bacteria from Brazilian mangrove sediment

(2009) Armando C. F. Dias et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Polycyclic Aromatic Hydrocarbon-Induced Structural Shift of Bacterial Communities in Mangrove Sediment

(2008) Hong Wei Zhou et al.   MICROBIAL ECOLOGY

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coastal Ecosystem-Based Management with Nonlinear Ecological Functions and Values

(2008) E. B. Barbier et al.   SCIENCE