The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

Archaeal communities in the sediments of three contrasting mangroves

(2011) Armando Cavalcante Franco Dias et al.   JOURNAL OF SOILS AND SEDIMENTS

Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution

(2011) Henrique Fragoso dos Santos et al.   PLoS One

Diversity and identification of methanogenic archaea and sulphate-reducing bacteria in sediments from a pristine tropical mangrove

(2010) Rodrigo Gouvêa Taketani et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

The bacterial diversity in a Brazilian non-disturbed mangrove sediment

(2010) Armando C. F. Dias et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities

(2010) Kristen M. DeAngelis et al.   BioEnergy Research

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia

(2010) Newton C.M. Gomes et al.   FEMS MICROBIOLOGY ECOLOGY

Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing

(2010) Rohit Ghai et al.   ISME Journal

The Future of microbial metagenomics (or is ignorance bliss?)

(2010) Jack A Gilbert et al.   ISME Journal

Microbial community structure across the tree of life in the extreme Río Tinto

(2010) Linda A Amaral-Zettler et al.   ISME Journal

Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara

(2010) Achim Quaiser et al.   ISME Journal

Microbial community response to a simulated hydrocarbon spill in mangrove sediments

(2010) Rodrigo Gouvêa Taketani et al.   JOURNAL OF MICROBIOLOGY

Spatial patterns of soil attributes and components in a mangrove system in Southeast Brazil (São Paulo)

(2010) Tiago Osório Ferreira et al.   JOURNAL OF SOILS AND SEDIMENTS

Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function

(2010) William P. Inskeep et al.   PLoS One

Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves

(2010) Newton C. M. Gomes et al.   PLoS One

Phylogenetic Diversity and Metabolic Potential Revealed in a Glacier Ice Metagenome

(2009) C. Simon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Metagenomic Analysis of a Microbial Community Residing at a Depth of 4,000 Meters at Station ALOHA in the North Pacific Subtropical Gyre

(2009) K. T. Konstantinidis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Achievements and new knowledge unraveled by metagenomic approaches

(2009) Carola Simon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads

(2009) Wolfgang Gerlach et al.   BMC BIOINFORMATICS

Assessing the diversity of bacterial communities associated with plants

(2009) Fernando Dini Andreote et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Comparative community genomics in the Dead Sea: an increasingly extreme environment

(2009) Idan Bodaker et al.   ISME Journal

Diversity and biotechnological potential of culturable bacteria from Brazilian mangrove sediment

(2009) Armando C. F. Dias et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Competition and coexistence of sulfate-reducing bacteria, acetogens and methanogens in a lab-scale anaerobic bioreactor as affected by changing substrate to sulfate ratio

(2008) Shabir A. Dar et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Exploring the diversity of bacterial communities in sediments of urban mangrove forests

(2008) Newton C. Marcial Gomes et al.   FEMS MICROBIOLOGY ECOLOGY

PAHs contamination and bacterial communities in mangrove surface sediments of the Jiulong River Estuary, China

(2008) Y. Tian et al.   MARINE POLLUTION BULLETIN

Metagenomics

(2008) Philip Hugenholtz et al.   NATURE

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA