Application of EST-SSR markers developed from the transcriptome of Torreya grandis (Taxaceae), a threatened nut-yielding conifer tree

Mining and characterizing EST-SSR markers from ESTs of Torreya grandis

(2016) Guanmei Yi et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Natural hybridization between Torreya jackii and T. grandis (Taxaceae) in southeast China

(2016) Yi-Xuan Kou et al.   Journal of Systematics and Evolution

Transcriptome sequencing and development of EST-SSR markers in Pinus dabeshanensis, an endangered conifer endemic to China

(2015) Xiaoyan Xiang et al.   MOLECULAR BREEDING

Growth, photosynthetic and physiological responses of Torreya grandis seedlings to varied light environments

(2015) Hui Tang et al.   TREES-STRUCTURE AND FUNCTION

Genetic linkage map construction and QTL identification of juvenile growth traits in Torreya grandis

(2014) Yanru Zeng et al.   BMC GENETICS

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation

(2014) J. L. Wegrzyn et al.   GENETICS

Sequencing and Assembly of the 22-Gb Loblolly Pine Genome

(2014) A. Zimin et al.   GENETICS

First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species,Pinus halepensisMill

(2014) S. Pinosio et al.   Molecular Ecology Resources

Salicylic acid induces physiological and biochemical changes in Torreya grandis cv. Merrillii seedlings under drought stress

(2014) Chaohua Shen et al.   TREES-STRUCTURE AND FUNCTION

Development of 36 novel polymorphic microsatellites for the critically endangered tree Pinus squamaia, by transcriptome database mining

(2014) Jian-Feng Mao et al.   Conservation Genetics Resources

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny

(2013) Shi-Hui Niu et al.   BMC GENOMICS

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

De novoassembly of maritime pine transcriptome: implications for forest breeding and biotechnology

(2013) Javier Canales et al.   PLANT BIOTECHNOLOGY JOURNAL

Bringing genetic diversity to the forefront of conservation policy and management

(2013) Sean M. Hoban et al.   Conservation Genetics Resources

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

Strategies for transcriptome analysis in nonmodel plants

(2012) Judson A. Ward et al.   AMERICAN JOURNAL OF BOTANY

A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica

(2012) Saneyoshi Ueno et al.   BMC GENOMICS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species

(2012) W. Walter Lorenz et al.   Tree Genetics & Genomes

Cross-species transferability of SSR loci developed from transciptome sequencing in lodgepole pine

(2011) MARK R. LESSER et al.   Molecular Ecology Resources

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

(2010) Allen Kovach et al.   BMC GENOMICS

POPTREE2: Software for Constructing Population Trees from Allele Frequency Data and Computing Other Population Statistics with Windows Interface

(2009) N. Takezaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of Genome Size and Complexity in Pinus

(2009) Alison M. Morse et al.   PLoS One