First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species,Pinus halepensisMill

Fire structures pine serotiny at different scales

(2013) Ana Hernández-Serrano et al.   AMERICAN JOURNAL OF BOTANY

A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation

(2013) Glenn T Howe et al.   BMC GENOMICS

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Plasticity in reproduction and growth among 52 range-wide populations of a Mediterranean conifer: adaptive responses to environmental stress

(2013) L. Santos-del-Blanco et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive evolution of Mediterranean pines

(2013) Delphine Grivet et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

In situgenetic association for serotiny, a fire-related trait, in Mediterranean maritime pine (Pinus pinaster)

(2013) Katharina B. Budde et al.   NEW PHYTOLOGIST

Development and Testing of New Gene-Homologous EST-SSRs for Eucalyptus gomphocephala (Myrtaceae)

(2013) Donna Bradbury et al.   Applications in Plant Sciences

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

(2012) Emmanuel Buschiazzo et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptome survey of Patagonian southern beech Nothofagus nervosa (= N. Alpina): assembly, annotation and molecular marker discovery

(2012) Susana L Torales et al.   BMC GENOMICS

Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms

(2012) Jun Chen et al.   BMC GENOMICS

Comparative mapping in the Fagaceae and beyond with EST-SSRs

(2012) Catherine Bodénès et al.   BMC PLANT BIOLOGY

Effects of bark beetle-caused tree mortality on wildfire

(2012) Jeffrey A. Hicke et al.   FOREST ECOLOGY AND MANAGEMENT

Fuel shapes the fire-climate relationship: evidence from Mediterranean ecosystems

(2012) Juli G. Pausas et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Fire-adapted traits ofPinusarose in the fiery Cretaceous

(2012) Tianhua He et al.   NEW PHYTOLOGIST

Climate Relicts: Past, Present, Future

(2011) Arndt Hampe et al.   Annual Review of Ecology Evolution and Systematics

rNA: a fast and accurate short reads numerical aligner

(2011) Francesco Vezzi et al.   BIOINFORMATICS

Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi

(2011) Sankar Subramanian et al.   BMC EVOLUTIONARY BIOLOGY

An annotated genetic map of loblolly pine based on microsatellite and cDNA markers

(2011) Craig S Echt et al.   BMC GENETICS

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.)

(2011) W Walter Lorenz et al.   BMC GENOMICS

Fire regime changes in the Western Mediterranean Basin: from fuel-limited to drought-driven fire regime

(2011) Juli G. Pausas et al.   CLIMATIC CHANGE

Pinus halepensis Mill. crown development and fruiting declined with repeated drought in Mediterranean France

(2011) François Girard et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis

(2011) Ruslan Kalendar et al.   GENOMICS

Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes

(2011) L. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genes to ecosystems: exploring the frontiers of ecology with one of the smallest biological units

(2011) Adam S. Wymore et al.   NEW PHYTOLOGIST

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

(2011) Da Cheng Hao et al.   PLoS One

Growth patterns in relation to drought-induced mortality at two Scots pine (Pinus sylvestris L.) sites in NE Iberian Peninsula

(2011) Ana-Maria Hereş et al.   TREES-STRUCTURE AND FUNCTION

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Molecular Footprints of Local Adaptation in Two Mediterranean Conifers

(2010) D. Grivet et al.   MOLECULAR BIOLOGY AND EVOLUTION

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

In Vitro vs In Silico Detected SNPs for the Development of a Genotyping Array: What Can We Learn from a Non-Model Species?

(2010) Camille Lepoittevin et al.   PLoS One

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Patterns of polymorphism resulting from long-range colonization in the Mediterranean conifer Aleppo pine

(2009) Delphine Grivet et al.   NEW PHYTOLOGIST

To grow or to seed: ecotypic variation in reproductive allocation and cone production by young female Aleppo pine (Pinus halepensis , Pinaceae)

(2008) José Climent et al.   AMERICAN JOURNAL OF BOTANY

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Threats and biodiversity in the mediterranean biome

(2008) Emma C. Underwood et al.   DIVERSITY AND DISTRIBUTIONS

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Use of Simultaneous Analyses to Guide Fossil‐Based Calibrations of Pinaceae Phylogeny

(2008) David S. Gernandt et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

NCBI Reference Sequences: current status, policy and new initiatives

(2008) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)

(2008) Andrew J. Eckert et al.   Tree Genetics & Genomes

Search for nucleotide diversity patterns of local adaptation in dehydrins and other cold-related candidate genes in Scots pine (Pinus sylvestris L.)

(2008) Witold Wachowiak et al.   Tree Genetics & Genomes

Climate-related variability in carbon and oxygen stable isotopes among populations of Aleppo pine grown in common-garden tests

(2008) Jordi Voltas et al.   TREES-STRUCTURE AND FUNCTION

Surfing during population expansions promotes genetic revolutions and structuration

(2008) Laurent Excoffier et al.   TRENDS IN ECOLOGY & EVOLUTION