Analysis of synonymous codon usage patterns in sixty-four different bivalve species

RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

(2015) Rebeca Moreira et al.   BMC GENOMICS

The genome of the Pacific oyster Crassostrea gigas brings new insights on the massive expansion of the C1q gene family in Bivalvia

(2015) Marco Gerdol et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

A phylogenetic backbone for Bivalvia: an RNA-seq approach

(2015) V. L. Gonzalez et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Deep transcriptome sequencing of Pecten maximus hemocytes: A genomic resource for bivalve immunology

(2014) Marianna Pauletto et al.   FISH & SHELLFISH IMMUNOLOGY

Investigating the Bivalve Tree of Life – an exemplar-based approach combining molecular and novel morphological characters

(2014) Rüdiger Bieler et al.   INVERTEBRATE SYSTEMATICS

Changes in protein expression in the salt marsh mussel Geukensia demissa: evidence for a shift from anaerobic to aerobic metabolism during prolonged aerial exposure

(2014) P. A. Fields et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The Anadara trapezia transcriptome: A resource for molluscan physiological genomics

(2014) Peter J. Prentis et al.   Marine Genomics

A Microarray-Based Analysis of Gametogenesis in Two Portuguese Populations of the European Clam Ruditapes decussatus

(2014) Joana Teixeira de Sousa et al.   PLoS One

Transcriptomic Analysis of the Mussel Elliptio complanata Identifies Candidate Stress-Response Genes and an Abundance of Novel or Noncoding Transcripts

(2014) Robert S. Cornman et al.   PLoS One

Comparative Transcriptome Analysis of Two Oysters, Crassostrea gigas and Crassostrea hongkongensis Provides Insights into Adaptation to Hypo-Osmotic Conditions

(2014) Xuelin Zhao et al.   PLoS One

Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda

(2014) F. Zapata et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic parameters and response to selection in blue mussel (Mytilus galloprovincialis) using a SNP-based pedigree

(2013) Thuy T.T. Nguyen et al.   AQUACULTURE

Genome-Wide SNP Validation and Mantle Tissue Transcriptome Analysis in the Silver-Lipped Pearl Oyster, Pinctada maxima

(2013) David B. Jones et al.   MARINE BIOTECHNOLOGY

Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)

(2013) Linlin Zhang et al.   MARINE BIOTECHNOLOGY

Bivalve Omics: State of the Art and Potential Applications for the Biomonitoring of Harmful Marine Compounds

(2013) Victoria Suárez-Ulloa et al.   Marine Drugs

Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallopChlamys farreri

(2013) X. Fu et al.   Molecular Ecology Resources

Tree Diversity Mediates the Distribution of Longhorn Beetles (Coleoptera: Cerambycidae) in a Changing Tropical Landscape (Southern Yunnan, SW China)

(2013) Ling-Zeng Meng et al.   PLoS One

Sequencing and De Novo Assembly of the Asian Clam (Corbicula fluminea) Transcriptome Using the Illumina GAIIx Method

(2013) Huihui Chen et al.   PLoS One

Genome-Wide Patterns of Codon Bias Are Shaped by Natural Selection in the Purple Sea Urchin, Strongylocentrotus purpuratus

(2013) Kord M. Kober et al.   G3-Genes Genomes Genetics

Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

(2012) T. Takeuchi et al.   DNA RESEARCH

Sequencing and analysis of four BAC clones containing innate immune genes from the Zhikong scallop (Chlamys farreri)

(2012) Cui Zhao et al.   GENE

The Transcriptome of Bathymodiolus azoricus Gill Reveals Expression of Genes from Endosymbionts and Free-Living Deep-Sea Bacteria

(2012) Conceição Egas et al.   Marine Drugs

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Sequencing and de novo Analysis of Crassostrea angulata (Fujian Oyster) from 8 Different Developing Phases Using 454 GSFlx

(2012) Ji Qin et al.   PLoS One

Comparative Analysis of Codon Usage Bias and Codon Context Patterns between Dipteran and Hymenopteran Sequenced Genomes

(2012) Susanta K. Behura et al.   PLoS One

Gene Expression and Physiological Changes of Different Populations of the Long-Lived Bivalve Arctica islandica under Low Oxygen Conditions

(2012) Eva E. R. Philipp et al.   PLoS One

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

De Novo Assembly of the Manila Clam Ruditapes philippinarum Transcriptome Provides New Insights into Expression Bias, Mitochondrial Doubly Uniparental Inheritance and Sex Determination

(2011) F. Ghiselli et al.   MOLECULAR BIOLOGY AND EVOLUTION

Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing

(2010) Melody S Clark et al.   BMC GENOMICS

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Forces that influence the evolution of codon bias

(2010) P. M. Sharp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A General Model of Codon Bias Due to GC Mutational Bias

(2010) Gareth A. Palidwor et al.   PLoS One

Codon usage bias is correlated with gene expression levels in the fission yeastSchizosaccharomyces pombe

(2009) Yasushi Hiraoka et al.   GENES TO CELLS

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics