Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)

Transcriptome Analysis of Pacific White Shrimp (Litopenaeus vannamei) Hepatopancreas in Response to Taura Syndrome Virus (TSV) Experimental Infection

(2013) Digang Zeng et al.   PLoS One

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Mutation in promoter region of a serine protease inhibitor confers Perkinsus marinus resistance in the eastern oyster (Crassostrea virginica)

(2012) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

Characterization of the Pearl Oyster (Pinctada martensii) Mantle Transcriptome Unravels Biomineralization Genes

(2012) Yaohua Shi et al.   MARINE BIOTECHNOLOGY

Gigabase-Scale Transcriptome Analysis on Four Species of Pearl Oysters

(2012) Xian-De Huang et al.   MARINE BIOTECHNOLOGY

Analysis of a deep transcriptome from the mantle tissue of Patella vulgata Linnaeus (Mollusca: Gastropoda: Patellidae) reveals candidate biomineralising genes

(2012) Gijsbert D. A. Werner et al.   MARINE BIOTECHNOLOGY

Identification of Relevant Cancer Related-Genes in the Flat Oyster Ostrea edulis Affected by Disseminated Neoplasia

(2012) Laura Martín-Gómez et al.   MARINE BIOTECHNOLOGY

Expressed Sequences and Polymorphisms in Rohu Carp (Labeo rohita, Hamilton) Revealed by mRNA-seq

(2012) Nicholas Robinson et al.   MARINE BIOTECHNOLOGY

Identification of Genes Potentially Related to Biomineralization and Immunity by Transcriptome Analysis of Pearl Sac in Pearl Oyster Pinctada martensii

(2012) Xiaoxia Zhao et al.   MARINE BIOTECHNOLOGY

Exploring the Transcriptome of Atlantic Salmon (Salmo salar) Skin, a Major Defense Organ

(2012) Giulia Micallef et al.   MARINE BIOTECHNOLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Massively Parallel RNA Sequencing Identifies a Complex Immune Gene Repertoire in the lophotrochozoan Mytilus edulis

(2012) Eva E. R. Philipp et al.   PLoS One

Unusual conservation of mitochondrial gene order in Crassostrea oysters: evidence for recent speciation in Asia

(2011) Jianfeng Ren et al.   BMC EVOLUTIONARY BIOLOGY

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

(2011) Barbara Feldmeyer et al.   BMC GENOMICS

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

(2011) Massimo Milan et al.   BMC GENOMICS

Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis

(2011) Paola Venier et al.   BMC GENOMICS

Gene discovery, comparative analysis and expression profile reveal the complexity of the Crassostrea gigas apoptosis system

(2011) Linlin Zhang et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Polymorphism in a serine protease inhibitor gene and its association with disease resistance in the eastern oyster (Crassostrea virginica Gmelin)

(2011) Haiyang Yu et al.   FISH & SHELLFISH IMMUNOLOGY

A Crassostrea gigas Toll-like receptor and comparative analysis of TLR pathway in invertebrates

(2011) Linlin Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptomic Characterization of the Larval Stage in Gilthead Seabream (Sparus aurata) by 454 Pyrosequencing

(2011) Manuel Yúfera et al.   MARINE BIOTECHNOLOGY

Transcriptomic Analysis of the Clam Meretrix meretrix on Different Larval Stages

(2011) Pin Huan et al.   MARINE BIOTECHNOLOGY

Gene Expression Profiling of Atlantic Cod (Gadus morhua) Embryogenesis Using Microarray

(2011) Øyvind Drivenes et al.   MARINE BIOTECHNOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

Mammalian apoptosis in a parasitic worm

(2011) S. H. Rosenberg   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Apoptosis and its functional significance in molluscs

(2010) Tibor Kiss   APOPTOSIS

Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing

(2010) Liusuo Zhang et al.   AQUACULTURE

Molecular diversity of antimicrobial effectors in the oyster Crassostrea gigas

(2010) Paulina Schmitt et al.   BMC EVOLUTIONARY BIOLOGY

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus

(2010) Raul Bettencourt et al.   BMC GENOMICS

Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing

(2010) Melody S Clark et al.   BMC GENOMICS

Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes

(2010) Eduardo R Macagno et al.   BMC GENOMICS

Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization

(2010) Caroline Joubert et al.   BMC GENOMICS

The C1q domain containing proteins: Where do they come from and what do they do?

(2010) Tristan M. Carland et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Apoptosis as a host defense mechanism in Crassostrea virginica and its modulation by Perkinsus marinus

(2010) Francis M. Hughes et al.   FISH & SHELLFISH IMMUNOLOGY

Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge

(2010) Shaolin Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Phagocytosis of the protozoan parasite, Marteilia sydneyi, by Sydney rock oyster (Saccostrea glomerata) hemocytes

(2010) Rhiannon P. Kuchel et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Serine protease inhibitor cvSI-1 potential role in the eastern oyster host defense against the protozoan parasite Perkinsus marinus

(2009) Jerome F. La Peyre et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

A novel C1q family member with fucose-binding activity from surfperch, Neoditrema ransonnetii (Perciformes, Embiotocidae)

(2009) Osamu Nakamura et al.   FISH & SHELLFISH IMMUNOLOGY

Interactions of Ficolin and Mannose-Binding Lectin with Fibrinogen/Fibrin Augment the Lectin Complement Pathway

(2009) Yuichi Endo et al.   Journal of Innate Immunity

Identification and Characterization of 66 EST-SSR Markers in the Eastern OysterCrassostrea virginica(Gmelin)

(2009) Yongping Wang et al.   JOURNAL OF SHELLFISH RESEARCH

Living with death: the evolution of the mitochondrial pathway of apoptosis in animals

(2008) A Oberst et al.   CELL DEATH AND DIFFERENTIATION

Mechanisms and Immunological Roles of Apoptosis in Molluscs

(2008) Kazutaka Terahara et al.   CURRENT PHARMACEUTICAL DESIGN

The amphioxus genome enlightens the evolution of the thyroid hormone signaling pathway

(2008) Mathilde Paris et al.   DEVELOPMENT GENES AND EVOLUTION

Rapid accumulation of an interleukin 17 homolog transcript in Crassostrea gigas hemocytes following bacterial exposure

(2008) Steven Roberts et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

A novel C1q-domain-containing protein from Zhikong scallop Chlamys farreri with lipopolysaccharide binding activity

(2008) H ZHANG et al.   FISH & SHELLFISH IMMUNOLOGY

Characterization of a C3 and a factor B-like in the carpet-shell clam, Ruditapes decussatus

(2008) M. Prado-Alvarez et al.   FISH & SHELLFISH IMMUNOLOGY

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY