De Novo Assembly of the Manila Clam Ruditapes philippinarum Transcriptome Provides New Insights into Expression Bias, Mitochondrial Doubly Uniparental Inheritance and Sex Determination

Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing

(2011) Peter L Chang et al.   BMC GENOMICS

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

(2011) Massimo Milan et al.   BMC GENOMICS

Association between Sex-Biased Gene Expression and Mutations with Sex-Specific Phenotypic Consequences in Drosophila

(2011) Tim Connallon et al.   Genome Biology and Evolution

Towards a More Nuanced Understanding of the Relationship between Sex-Biased Gene Expression and Rates of Protein-Coding Sequence Evolution

(2011) R. P. Meisel   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for a Fourteenth mtDNA-Encoded Protein in the Female-Transmitted mtDNA of Marine Mussels (Bivalvia: Mytilidae)

(2011) Sophie Breton et al.   PLoS One

Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA

(2010) Hélène Doucet-Beaupré et al.   BMC EVOLUTIONARY BIOLOGY

Novel Protein Genes in Animal mtDNA: A New Sex Determination System in Freshwater Mussels (Bivalvia: Unionoida)?

(2010) Sophie Breton et al.   MOLECULAR BIOLOGY AND EVOLUTION

Towards a molecular phylogeny of Mollusks: Bivalves’ early evolution as revealed by mitochondrial genes

(2010) Federico Plazzi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pyrosequencing of Mytilus galloprovincialis cDNAs: Tissue-Specific Expression Patterns

(2010) John A. Craft et al.   PLoS One

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Are sex-biased genes more dispensable?

(2009) J. E. Mank et al.   Biology Letters

Doubly Uniparental Inheritance: Two Mitochondrial Genomes, One Precious Model for Organelle DNA Inheritance and Evolution

(2009) Marco Passamonti et al.   DNA AND CELL BIOLOGY

Paternal mtDNA and Maleness Are Co-Inherited but Not Causally Linked in Mytilid Mussels

(2009) Ellen L. Kenchington et al.   PLoS One

Systems biology asks new questions about sex differences

(2009) Arthur P. Arnold et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Sex determination in mammals — Before and after the evolution of SRY

(2008) M. C. Wallis et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Evolution of protein-coding genes in Drosophila

(2008) Amanda M. Larracuente et al.   TRENDS IN GENETICS

E1 Ubiquitin-Activating Enzyme UBA-1 Plays Multiple Roles throughout C. elegans Development

(2008) Madhura Kulkarni et al.   PLoS Genetics

Pleiotropic Constraint Hampers the Resolution of Sexual Antagonism in Vertebrate Gene Expression

(2007) Judith E. Mank et al.   AMERICAN NATURALIST