Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter

A label-free and self-assembled electrochemical biosensor for highly sensitive detection of cyclic diguanylate monophosphate (c-di-GMP) based on RNA riboswitch

(2015) Qingyun Xie et al.   ANALYTICA CHIMICA ACTA

Functional Analysis of a c-di-AMP-specific Phosphodiesterase MsPDE from Mycobacterium smegmatis

(2015) Qing Tang et al.   International Journal of Biological Sciences

Novel genetic tools to tackle c-di-GMP-dependent signalling inPseudomonas aeruginosa

(2015) S. Vishnu Pawar et al.   JOURNAL OF APPLIED MICROBIOLOGY

Expression and Genetic Activation of Cyclic Di-GMP-Specific Phosphodiesterases in Escherichia coli

(2015) Alberto Reinders et al.   JOURNAL OF BACTERIOLOGY

Diversity of Cyclic Di-GMP-Binding Proteins and Mechanisms

(2015) Shan-Ho Chou et al.   JOURNAL OF BACTERIOLOGY

Design criteria for synthetic riboswitches acting on transcription

(2015) Manja Wachsmuth et al.   RNA Biology

A minimalist biosensor: Quantitation of cyclic di-GMP using the conformational change of a riboswitch aptamer

(2015) Colleen A Kellenberger et al.   RNA Biology

Deletion Mutant Library for Investigation of Functional Outputs of Cyclic Diguanylate Metabolism in Pseudomonas aeruginosa PA14

(2014) Dae-Gon Ha et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Engineering of Bacillus subtilis Strains To Allow Rapid Characterization of Heterologous Diguanylate Cyclases and Phosphodiesterases

(2014) Xiaohui Gao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ligand binding by the tandem glycine riboswitch depends on aptamer dimerization but not double ligand occupancy

(2014) Karen M. Ruff et al.   RNA

A Decade of Riboswitches

(2013) Alexander Serganov et al.   CELL

Diversity ofBacillus cereusgroup strains is reflected in their broad range of pathogenicity and diverse ecological lifestyles

(2013) Siele Ceuppens et al.   FEMS MICROBIOLOGY ECOLOGY

RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messengers Cyclic di-GMP and Cyclic AMP-GMP

(2013) Colleen A. Kellenberger et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger

(2013) U. Romling et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Metabolic Regulation of Sporulation and Parasporal Crystal Formation inBacillus thuringiensisRevealed by Transcriptomics and Proteomics

(2013) Jieping Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

E88, a new cyclic-di-GMP class I riboswitch aptamer from Clostridium tetani, has a similar fold to the prototypical class I riboswitch, Vc2, but differentially binds to c-di-GMP analogs

(2013) Yiling Luo et al.   Molecular BioSystems

High-Throughput Identification of Promoters and Screening of Highly Active Promoter-5′-UTR DNA Region with Different Characteristics from Bacillus thuringiensis

(2013) Jieping Wang et al.   PLoS One

Engineered Allosteric Ribozymes That Sense the Bacterial Second Messenger Cyclic Diguanosyl 5′-Monophosphate

(2012) Hongzhou Gu et al.   ANALYTICAL CHEMISTRY

Fluorescence-Based Reporter for Gauging Cyclic Di-GMP Levels in Pseudomonas aeruginosa

(2012) Morten T. Rybtke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy

(2012) Shizuka Nakayama et al.   CHEMICAL COMMUNICATIONS

You’ve come a long way: c-di-GMP signaling

(2012) Holger Sondermann et al.   CURRENT OPINION IN MICROBIOLOGY

Cyclic Diguanylate Inversely Regulates Motility and Aggregation in Clostridium difficile

(2012) E. B. Purcell et al.   JOURNAL OF BACTERIOLOGY

A full-length bifunctional protein involved in c-di-GMP turnover is required for long-term survival under nutrient starvation in Mycobacterium smegmatis

(2012) B. K. Bharati et al.   MICROBIOLOGY-SGM

Sensing the messenger: The diverse ways that bacteria signal through c-di-GMP

(2012) Petya Violinova Krasteva et al.   PROTEIN SCIENCE

Enzymatically Active and Inactive Phosphodiesterases and Diguanylate Cyclases Are Involved in Regulation of Motility or Sessility in Escherichia coli CFT073

(2012) R. R. Spurbeck et al.   mBio

The bacterial second messenger c-di-GMP: mechanisms of signalling

(2011) Erez Mills et al.   CELLULAR MICROBIOLOGY

Structural Basis of Cooperative Ligand Binding by the Glycine Riboswitch

(2011) Ethan B. Butler et al.   CHEMISTRY & BIOLOGY

Systematic Analysis of Diguanylate Cyclases That Promote Biofilm Formation by Pseudomonas fluorescens Pf0-1

(2011) P. D. Newell et al.   JOURNAL OF BACTERIOLOGY

Identification and Characterization of CdgB, a Diguanylate Cyclase Involved in Developmental Processes in Streptomyces coelicolor

(2011) N. T. Tran et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Bacillus thuringiensis subsp. chinensis Strain CT-43

(2011) J. He et al.   JOURNAL OF BACTERIOLOGY

Differential Analogue Binding by Two Classes of c-di-GMP Riboswitches

(2011) Carly A. Shanahan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Prospects for Riboswitch Discovery and Analysis

(2011) Ronald R. Breaker   MOLECULAR CELL

Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches

(2011) K. D. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

c-di-GMP Turn-Over in Clostridium difficile Is Controlled by a Plethora of Diguanylate Cyclases and Phosphodiesterases

(2011) Eric Bordeleau et al.   PLoS Genetics

Complete Genome Sequence of Bacillus thuringiensis Mutant Strain BMB171

(2010) J. He et al.   JOURNAL OF BACTERIOLOGY

A liquid chromatography-coupled tandem mass spectrometry method for quantitation of cyclic di-guanosine monophosphate

(2010) Christian Spangler et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Structural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine Riboswitch

(2010) Lili Huang et al.   MOLECULAR CELL

A post-translational, c-di-GMP-dependent mechanism regulating flagellar motility

(2010) Xin Fang et al.   MOLECULAR MICROBIOLOGY

An Allosteric Self-Splicing Ribozyme Triggered by a Bacterial Second Messenger

(2010) E. R. Lee et al.   SCIENCE

Asymmetrical Distribution of the Second Messenger c-di-GMP upon Bacterial Cell Division

(2010) M. Christen et al.   SCIENCE

Bacillus thuringiensis: an impotent pathogen?

(2010) Ben Raymond et al.   TRENDS IN MICROBIOLOGY

Structural basis of ligand binding by a c-di-GMP riboswitch

(2009) Kathryn D Smith et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria

(2009) E. Poiata et al.   RNA

Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis

(2008) M. Kumar et al.   MICROBIOLOGY-SGM

Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP

(2008) N. Sudarsan et al.   SCIENCE

Complex Riboswitches

(2008) R. R. Breaker   SCIENCE