Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals
出版年份 2015 全文链接
标题
Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals
作者
关键词
-
出版物
eLife
Volume 4, Issue -, Pages -
出版商
eLife Sciences Organisation, Ltd.
发表日期
2015-10-14
DOI
10.7554/elife.08904
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica
- (2015) Selene L Fernandez-Valverde et al. BMC GENOMICS
- Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi
- (2015) Guifré Torruella et al. CURRENT BIOLOGY
- Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity
- (2015) Federico Gaiti et al. MOLECULAR BIOLOGY AND EVOLUTION
- Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
- (2015) Hadas Hezroni et al. Cell Reports
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- A Highly Conserved Program of Neuronal Microexons Is Misregulated in Autistic Brains
- (2014) Manuel Irimia et al. CELL
- New Tricks for “Old” Domains: How Novel Architectures and Promiscuous Hubs Contributed to the Organization and Evolution of the ECM
- (2014) Graham Cromar et al. Genome Biology and Evolution
- The Evolution of the GPCR Signaling System in Eukaryotes: Modularity, Conservation, and the Transition to Metazoan Multicellularity
- (2014) Alex de Mendoza et al. Genome Biology and Evolution
- Widespread intron retention in mammals functionally tunes transcriptomes
- (2014) Ulrich Braunschweig et al. GENOME RESEARCH
- Profiling the Secretome and Extracellular Proteome of the Potato Late Blight PathogenPhytophthora infestans
- (2014) Harold J. G. Meijer et al. MOLECULAR & CELLULAR PROTEOMICS
- Evolutionary Insights into Premetazoan Functions of the Neuronal Protein Homer
- (2014) Pawel Burkhardt et al. MOLECULAR BIOLOGY AND EVOLUTION
- Transferred interbacterial antagonism genes augment eukaryotic innate immune function
- (2014) Seemay Chou et al. NATURE
- Comparative analysis of the transcriptome across distant species
- (2014) Mark B. Gerstein et al. NATURE
- Evolutionary dynamics of coding and non-coding transcriptomes
- (2014) Anamaria Necsulea et al. NATURE REVIEWS GENETICS
- The rise of regulatory RNA
- (2014) Kevin V. Morris et al. NATURE REVIEWS GENETICS
- Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications
- (2014) Aurélie Kapusta et al. TRENDS IN GENETICS
- Origin of Spliceosomal Introns and Alternative Splicing
- (2014) M. Irimia et al. Cold Spring Harbor Perspectives in Biology
- Antibacterial gene transfer across the tree of life
- (2014) Jason A Metcalf et al. eLife
- The Genomic and Cellular Foundations of Animal Origins
- (2013) Daniel J. Richter et al. Annual Review of Genetics
- lincRNAs: Genomics, Evolution, and Mechanisms
- (2013) Igor Ulitsky et al. CELL
- Development of ichthyosporeans sheds light on the origin of metazoan multicellularity
- (2013) Hiroshi Suga et al. DEVELOPMENTAL BIOLOGY
- Phylogenetic interpretations and ecological potentials of the Mesomycetozoea (Ichthyosporea)
- (2013) Sally L. Glockling et al. Fungal Ecology
- Insights into the Origin of Metazoan Filopodia and Microvilli
- (2013) Arnau Sebé-Pedrós et al. MOLECULAR BIOLOGY AND EVOLUTION
- Earliest Holozoan Expansion of Phosphotyrosine Signaling
- (2013) Hiroshi Suga et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MBNL proteins repress ES-cell-specific alternative splicing and reprogramming
- (2013) Hong Han et al. NATURE
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Horizontal gene transfer in osmotrophs: playing with public goods
- (2013) Thomas A. Richards et al. NATURE REVIEWS MICROBIOLOGY
- Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages
- (2013) A. de Mendoza et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell cycle control across the eukaryotic kingdom
- (2013) Hirofumi Harashima et al. TRENDS IN CELL BIOLOGY
- The Capsaspora genome reveals a complex unicellular prehistory of animals
- (2013) Hiroshi Suga et al. Nature Communications
- Regulated aggregative multicellularity in a close unicellular relative of metazoa
- (2013) Arnau Sebé-Pedrós et al. eLife
- Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa
- (2012) Thomas Cavalier-Smith EUROPEAN JOURNAL OF PROTISTOLOGY
- Molecular Signatures of the Three Stem Cell Lineages in Hydra and the Emergence of Stem Cell Function at the Base of Multicellularity
- (2012) Georg Hemmrich et al. MOLECULAR BIOLOGY AND EVOLUTION
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- (2012) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- NIH Image to ImageJ: 25 years of image analysis
- (2012) Caroline A Schneider et al. NATURE METHODS
- Rfam 11.0: 10 years of RNA families
- (2012) Sarah W. Burge et al. NUCLEIC ACIDS RESEARCH
- Molecular Phylogeny of Unikonts: New Insights into the Position of Apusomonads and Ancyromonads and the Internal Relationships of Opisthokonts
- (2012) Jordi Paps et al. PROTIST
- Physico-Genetic Determinants in the Evolution of Development
- (2012) S. A. Newman SCIENCE
- The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
- (2012) N. L. Barbosa-Morais et al. SCIENCE
- Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases
- (2012) H. Suga et al. Science Signaling
- Premetazoan Origin of the Hippo Signaling Pathway
- (2012) Arnau Sebé-Pedrós et al. Cell Reports
- Cell differentiation and morphogenesis in the colony-forming choanoflagellate Salpingoeca rosetta
- (2011) Mark J. Dayel et al. DEVELOPMENTAL BIOLOGY
- Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
- (2011) A. Pauli et al. GENOME RESEARCH
- Differential expression in RNA-seq: A matter of depth
- (2011) S. Tarazona et al. GENOME RESEARCH
- Metalloproteinase-mediated Shedding of Integrin β2 Promotes Macrophage Efflux from Inflammatory Sites
- (2011) Ivan G. Gomez et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Phylogenetic Relationships within the Opisthokonta Based on Phylogenomic Analyses of Conserved Single-Copy Protein Domains
- (2011) G. Torruella et al. MOLECULAR BIOLOGY AND EVOLUTION
- The evolution of gene expression levels in mammalian organs
- (2011) David Brawand et al. NATURE
- Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
- (2011) I. Letunic et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- Evolution of networks and sequences in eukaryotic cell cycle control
- (2011) F. R. Cross et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Primordial neurosecretory apparatus identified in the choanoflagellate Monosiga brevicollis
- (2011) P. Burkhardt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
- (2011) T. A. Richards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene transfer into the fungi
- (2011) Thomas A. Richards et al. Fungal Biology Reviews
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- Six major steps in animal evolution: are we derived sponge larvae?
- (2010) Claus Nielsen EVOLUTION & DEVELOPMENT
- Duplication Frequency in a Population of Salmonella enterica Rapidly Approaches Steady State With or Without Recombination
- (2010) A. B. Reams et al. GENETICS
- Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki
- (2010) A. Sebe-Pedros et al. MOLECULAR BIOLOGY AND EVOLUTION
- Ancient origin of the integrin-mediated adhesion and signaling machinery
- (2010) A. Sebe-Pedros et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- The origin of Metazoa: a transition from temporal to spatial cell differentiation
- (2009) Kirill V. Mikhailov et al. BIOESSAYS
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- The Fungi
- (2009) Jason E. Stajich et al. CURRENT BIOLOGY
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Phylogeny of the "Forgotten" Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta
- (2009) M. W. Brown et al. MOLECULAR BIOLOGY AND EVOLUTION
- ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
- (2009) Iain MacCallum et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration
- (2008) S. Bauer et al. BIOINFORMATICS
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
- PredGPI: a GPI-anchor predictor
- (2008) Andrea Pierleoni et al. BMC BIOINFORMATICS
- Sponge Genes Provide New Insight into the Evolutionary Origin of the Neurogenic Circuit
- (2008) Gemma S. Richards et al. CURRENT BIOLOGY
- The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
- (2008) Nicole King et al. NATURE
- The evolution of cell types in animals: emerging principles from molecular studies
- (2008) Detlev Arendt NATURE REVIEWS GENETICS
- High-throughput functional annotation and data mining with the Blast2GO suite
- (2008) S. Gotz et al. NUCLEIC ACIDS RESEARCH
- Multiple Isolations of a Culturable, Motile Ichthyosporean (Mesomycetozoa, Opisthokonta), Creolimax fragrantissima n. gen., n. sp., from Marine Invertebrate Digestive Tracts
- (2008) Wyth L. Marshall et al. PROTIST
- Cross-kingdom patterns of alternative splicing and splice recognition
- (2008) Abigail M McGuire et al. GENOME BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More