Rfam 11.0: 10 years of RNA families

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

(2012) Omri Wurtzel et al.   Molecular Systems Biology

Comparative Analysis of RNA Families Reveals Distinct Repertoires for Each Domain of Life

(2012) Marc P. Hoeppner et al.   PLoS Computational Biology

IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming

(2011) Kengo Sato et al.   BIOINFORMATICS

Structator: fast index-based search for RNA sequence-structure patterns

(2011) Fernando Meyer et al.   BMC BIOINFORMATICS

The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse

(2011) J. T. Eppig et al.   NUCLEIC ACIDS RESEARCH

The Gene Wiki in 2011: community intelligence applied to human gene annotation

(2011) Benjamin M. Good et al.   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Construction of anrsmXco-variance model and identification of fiversmXnon-coding RNAs inPseudomonas syringae pv. tomatoDC3000

(2011) Simon Moll et al.   RNA Biology

sRNA-Xcc1, an integron-encoded transposon- and plasmid-transferred trans-acting sRNA, is under the positive control of the key virulence regulators HrpG and HrpX ofXanthomonas campestrispathovarcampestris

(2011) Xiao-Lin Chen et al.   RNA Biology

BioMart: a data federation framework for large collaborative projects

(2011) J. Zhang et al.   Database-The Journal of Biological Databases and Curation

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

The RNA WikiProject: Community annotation of RNA families

(2008) J. Daub et al.   RNA