Differentially expressed genes in mycorrhized and nodulated roots of common bean are associated with defense, cell wall architecture, N metabolism, and P metabolism
出版年份 2017 全文链接
标题
Differentially expressed genes in mycorrhized and nodulated roots of common bean are associated with defense, cell wall architecture, N metabolism, and P metabolism
作者
关键词
Symbiosis, Proteus vulgaris, Gene expression, Cell metabolism, Plant cell walls, Transcriptome analysis, Metabolic processes, Transcription factors
出版物
PLoS One
Volume 12, Issue 8, Pages e0182328
出版商
Public Library of Science (PLoS)
发表日期
2017-08-04
DOI
10.1371/journal.pone.0182328
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- An Autophagy-Related Kinase Is Essential for the Symbiotic Relationship between Phaseolus vulgaris and Both Rhizobia and Arbuscular Mycorrhizal Fungi
- (2016) Georgina Estrada-Navarrete et al. PLANT CELL
- Expansins: roles in plant growth and potential applications in crop improvement
- (2016) Prince Marowa et al. PLANT CELL REPORTS
- A Legume TOR Protein Kinase Regulates Rhizobium Symbiosis and Is Essential for Infection and Nodule Development
- (2016) Kalpana Nanjareddy et al. PLANT PHYSIOLOGY
- KNOTTED1-LIKE HOMEOBOX 3: a new regulator of symbiotic nodule development
- (2015) M. Azarakhsh et al. JOURNAL OF EXPERIMENTAL BOTANY
- RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression inLotus japonicusandRhizophagus irregularis
- (2015) Yoshihiro Handa et al. PLANT AND CELL PHYSIOLOGY
- Full-lengthde novoassembly of RNA-seq data in pea (Pisum sativumL.) provides a gene expression atlas and gives insights into root nodulation in this species
- (2015) Susete Alves-Carvalho et al. PLANT JOURNAL
- Deep Sequencing of theMedicago truncatulaRoot Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals
- (2015) Estíbaliz Larrainzar et al. PLANT PHYSIOLOGY
- Network of GRAS Transcription Factors Involved in the Control of Arbuscule Development inLotus japonicus
- (2015) Li Xue et al. PLANT PHYSIOLOGY
- Biosynthesis and possible functions of inositol pyrophosphates in plants
- (2015) Sarah P. Williams et al. Frontiers in Plant Science
- An RNA-Seq based gene expression atlas of the common bean
- (2014) Jamie A O’Rourke et al. BMC GENOMICS
- Synthetic biology approaches to engineering the nitrogen symbiosis in cereals
- (2014) C. Rogers et al. JOURNAL OF EXPERIMENTAL BOTANY
- Nitrate regulates rhizobial and mycorrhizal symbiosis in common bean (Phaseolus vulgarisL.)
- (2014) Kalpana Nanjareddy et al. Journal of Integrative Plant Biology
- RbohB, aPhaseolus vulgarisNADPH oxidase gene, enhances symbiosome number, bacteroid size, and nitrogen fixation in nodules and impairs mycorrhizal colonization
- (2014) Manoj-Kumar Arthikala et al. NEW PHYTOLOGIST
- Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis betweenLaccaria bicolorandPopulusroots
- (2014) Jonathan M. Plett et al. NEW PHYTOLOGIST
- Soybean miR172c Targets the Repressive AP2 Transcription Factor NNC1 to ActivateENOD40Expression and Regulate Nodule Initiation
- (2014) Youning Wang et al. PLANT CELL
- Arabidopsis inositol pentakisphosphate 2-kinase, AtIPK1, is required for growth and modulates phosphate homeostasis at the transcriptional level
- (2014) Hui-Fen Kuo et al. PLANT JOURNAL
- An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing
- (2014) Brice Roux et al. PLANT JOURNAL
- Two CCAAT-box-binding transcription factors redundantly regulate early steps of the legume-rhizobia endosymbiosis
- (2014) Tom Laloum et al. PLANT JOURNAL
- A Nuclear Factor Y Interacting Protein of the GRAS Family Is Required for Nodule Organogenesis, Infection Thread Progression, and Lateral Root Growth
- (2014) M. Battaglia et al. PLANT PHYSIOLOGY
- Gibberellins Interfere with Symbiosis Signaling and Gene Expression and Alter Colonization by Arbuscular Mycorrhizal Fungi inLotus japonicus
- (2014) Naoya Takeda et al. PLANT PHYSIOLOGY
- A roadmap of cell-type specific gene expression during sequential stages of the arbuscular mycorrhiza symbiosis
- (2013) Claudia Hogekamp et al. BMC GENOMICS
- Plant Nucleotide Binding Site–Leucine-Rich Repeat (NBS-LRR) Genes: Active Guardians in Host Defense Responses
- (2013) Daniela Marone et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The CCAAT box-binding transcription factor NF-YA1 controls rhizobial infection
- (2013) Philippe Laporte et al. JOURNAL OF EXPERIMENTAL BOTANY
- Signaling at the Root Surface: The Role of Cutin Monomers in Mycorrhization
- (2013) Jeremy D. Murray et al. Molecular Plant
- Nodulin 22, a Novel Small Heat-Shock Protein of the Endoplasmic Reticulum, Is Linked to the Unfolded Protein Response in Common Bean
- (2013) Jonathan Rodriguez-López et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants
- (2013) Giles E. D. Oldroyd NATURE REVIEWS MICROBIOLOGY
- Short-chain chitin oligomers from arbuscular mycorrhizal fungi trigger nuclear Ca2+spiking inMedicago truncatularoots and their production is enhanced by strigolactone
- (2013) Andrea Genre et al. NEW PHYTOLOGIST
- PvRbohB negatively regulates Rhizophagus irregularis colonization in Phaseolus vulgaris
- (2013) Manoj-Kumar Arthikala et al. PLANT AND CELL PHYSIOLOGY
- Quality Control of RNA Preservation and Extraction from Paraffin-Embedded Tissue: Implications for RT-PCR and Microarray Analysis
- (2013) Karl Kashofer et al. PLoS One
- The In Vitro Mass-Produced Model Mycorrhizal Fungus, Rhizophagus irregularis, Significantly Increases Yields of the Globally Important Food Security Crop Cassava
- (2013) Isabel Ceballos et al. PLoS One
- NODULE INCEPTION Directly Targets NF-Y Subunit Genes to Regulate Essential Processes of Root Nodule Development in Lotus japonicus
- (2013) Takashi Soyano et al. PLoS Genetics
- A GRAS-Type Transcription Factor with a Specific Function in Mycorrhizal Signaling
- (2012) Enrico Gobbato et al. CURRENT BIOLOGY
- Down-regulation ofPvTRE1enhances nodule biomass and bacteroid number in the common bean
- (2012) Aarón Barraza et al. NEW PHYTOLOGIST
- A Phaseolus vulgaris NADPH Oxidase Gene is Required for Root Infection by Rhizobia
- (2012) Jesús Montiel et al. PLANT AND CELL PHYSIOLOGY
- Divergent functions of the myotubularin (MTM) homologs AtMTM1 and AtMTM2 in Arabidopsis thaliana: evolution of the plant MTM family
- (2012) Yong Ding et al. PLANT JOURNAL
- Group III-A XTH Genes of Arabidopsis Encode Predominant Xyloglucan Endohydrolases That Are Dispensable for Normal Growth
- (2012) N. Kaewthai et al. PLANT PHYSIOLOGY
- Expression Dynamics of the Medicago truncatula Transcriptome during the Symbiotic Interaction with Sinorhizobium meliloti: Which Role for Nitric Oxide?
- (2012) A. Boscari et al. PLANT PHYSIOLOGY
- Medicago truncatula ERN Transcription Factors: Regulatory Interplay with NSP1/NSP2 GRAS Factors and Expression Dynamics throughout Rhizobial Infection
- (2012) M. R. Cerri et al. PLANT PHYSIOLOGY
- Heart of Endosymbioses: Transcriptomics Reveals a Conserved Genetic Program among Arbuscular Mycorrhizal, Actinorhizal and Legume-Rhizobial Symbioses
- (2012) Alexandre Tromas et al. PLoS One
- The Plant Cell Wall: A Dynamic Barrier Against Pathogen Invasion
- (2012) William Underwood Frontiers in Plant Science
- How membranes shape plant symbioses: signaling and transport in nodulation and arbuscular mycorrhiza
- (2012) Laure Bapaume et al. Frontiers in Plant Science
- Roles of Arbuscular Mycorrhizas in Plant Nutrition and Growth: New Paradigms from Cellular to Ecosystem Scales
- (2011) Sally E. Smith et al. Annual Review of Plant Biology
- PvRACK1 Loss-of-Function Impairs Cell Expansion and Morphogenesis inPhaseolus vulgarisL. Root Nodules
- (2011) Tania Islas-Flores et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Down-regulation of SymRK correlates with a deficiency in vascular bundle development in Phaseolus vulgaris nodules
- (2011) ROSANA SÁNCHEZ-LÓPEZ et al. PLANT CELL AND ENVIRONMENT
- Characterization of the Arabidopsis glycerophosphodiester phosphodiesterase (GDPD) family reveals a role of the plastid-localized AtGDPD1 in maintaining cellular phosphate homeostasis under phosphate starvation
- (2011) Yuxiang Cheng et al. PLANT JOURNAL
- A soybean β-expansin gene GmEXPB2 intrinsically involved in root system architecture responses to abiotic stresses
- (2011) Wenbing Guo et al. PLANT JOURNAL
- Arbuscule-containing and non-colonized cortical cells of mycorrhizal roots undergo extensive and specific reprogramming during arbuscular mycorrhizal development
- (2011) Nicole Gaude et al. PLANT JOURNAL
- Laser Microdissection Unravels Cell-Type-Specific Transcription in Arbuscular Mycorrhizal Roots, Including CAAT-Box Transcription Factor Gene Expression Correlating with Fungal Contact and Spread
- (2011) C. Hogekamp et al. PLANT PHYSIOLOGY
- Roles of Arbuscular Mycorrhizas in Plant Phosphorus Nutrition: Interactions between Pathways of Phosphorus Uptake in Arbuscular Mycorrhizal Roots Have Important Implications for Understanding and Manipulating Plant Phosphorus Acquisition
- (2011) S. E. Smith et al. PLANT PHYSIOLOGY
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza
- (2010) Fabienne Maillet et al. NATURE
- agriGO: a GO analysis toolkit for the agricultural community
- (2010) Zhou Du et al. NUCLEIC ACIDS RESEARCH
- A C Subunit of the Plant Nuclear Factor NF-Y Required for Rhizobial Infection and Nodule Development Affects Partner Selection in the Common Bean–Rhizobium etliSymbiosis
- (2010) María Eugenia Zanetti et al. PLANT CELL
- Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis
- (2009) S Karen Gomez et al. BMC PLANT BIOLOGY
- The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments
- (2009) S. A. Bustin et al. CLINICAL CHEMISTRY
- Plant lectins: the ties that bind in root symbiosis and plant defense
- (2009) Peter L. De Hoff et al. MOLECULAR GENETICS AND GENOMICS
- Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus
- (2009) Mike Guether et al. NEW PHYTOLOGIST
- Enhanced Defense Responses in Arabidopsis Induced by the Cell Wall Protein Fractions from Pythium oligandrum Require SGT1, RAR1, NPR1 and JAR1
- (2009) Yoko Kawamura et al. PLANT AND CELL PHYSIOLOGY
- GRAS Proteins Form a DNA Binding Complex to Induce Gene Expression during Nodulation Signaling in Medicago truncatula
- (2009) S. Hirsch et al. PLANT CELL
- Responses of legumes to rhizobia and arbuscular mycorrhizal fungi: A meta-analysis of potential photosynthate limitation of symbioses
- (2009) Glaciela Kaschuk et al. SOIL BIOLOGY & BIOCHEMISTRY
- Establishing nitrogen-fixing symbiosis with legumes: how many rhizobium recipes?
- (2009) Catherine Masson-Boivin et al. TRENDS IN MICROBIOLOGY
- Coordinating Nodule Morphogenesis with Rhizobial Infection in Legumes
- (2008) Giles E.D. Oldroyd et al. Annual Review of Plant Biology
- Bacterial Polysaccharides Suppress Induced Innate Immunity by Calcium Chelation
- (2008) Shazia N. Aslam et al. CURRENT BIOLOGY
- Response of soybean cultivars toward inoculation with three arbuscular mycorrhizal fungi and Bradyrhizobium japonicum in the alluvial soil
- (2008) Mukesh K. Meghvansi et al. EUROPEAN JOURNAL OF SOIL BIOLOGY
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- EFD Is an ERF Transcription Factor Involved in the Control of Nodule Number and Differentiation in Medicago truncatula
- (2008) T. Vernie et al. PLANT CELL
- Nitrogen Recycling and Remobilization Are Differentially Controlled by Leaf Senescence and Development Stage in Arabidopsis under Low Nitrogen Nutrition
- (2008) C. Diaz et al. PLANT PHYSIOLOGY
- A Positive Regulatory Role for LjERF1 in the Nodulation Process Is Revealed by Systematic Analysis of Nodule-Associated Transcription Factors of Lotus japonicus
- (2008) E. Asamizu et al. PLANT PHYSIOLOGY
- The role of JAR1 in Jasmonoyl-l-isoleucine production during Arabidopsis wound response
- (2008) Walter P. Suza et al. PLANTA
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started