An RNA-Seq based gene expression atlas of the common bean

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicum strain CPAC 15

(2013) Gesiele Almeida Barros de Carvalho et al.   BMC GENOMICS

Rhizobial infection does not require cortical expression of upstream common symbiosis genes responsible for the induction of Ca2+spiking

(2013) Teruyuki Hayashi et al.   PLANT JOURNAL

Epidermal and cortical roles of NFP and DMI3 in coordinating early steps of nodulation in Medicago truncatula

(2012) P. Rival et al.   DEVELOPMENT

Deep Sequencing Identifies Viral and Wasp Genes with Potential Roles in Replication of Microplitis demolitor Bracovirus

(2012) G. R. Burke et al.   JOURNAL OF VIROLOGY

Down-regulation ofPvTRE1enhances nodule biomass and bacteroid number in the common bean

(2012) Aarón Barraza et al.   NEW PHYTOLOGIST

Identification of systemic responses in soybean nodulation by xylem sap feeding and complete transcriptome sequencing reveal a novel component of the autoregulation pathway

(2012) Dugald E. Reid et al.   PLANT BIOTECHNOLOGY JOURNAL

Transient Nod factor-dependent gene expression in the nodulation-competent zone of soybean (Glycine max [L.] Merr.) roots

(2012) Satomi Hayashi et al.   PLANT BIOTECHNOLOGY JOURNAL

Medicago truncatula ERN Transcription Factors: Regulatory Interplay with NSP1/NSP2 GRAS Factors and Expression Dynamics throughout Rhizobial Infection

(2012) M. R. Cerri et al.   PLANT PHYSIOLOGY

An RNA-Seq Transcriptome Analysis of Orthophosphate-Deficient White Lupin Reveals Novel Insights into Phosphorus Acclimation in Plants

(2012) J. A. O'Rourke et al.   PLANT PHYSIOLOGY

Nitrate sensing and signaling in plants

(2012) Eléonore Bouguyon et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Nodulin 41, a novel late nodulin of common bean with peptidase activity

(2011) Juan Olivares et al.   BMC PLANT BIOLOGY

Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing

(2011) Venu Kalavacharla et al.   BMC PLANT BIOLOGY

Synergistic influence of sucrose and abscisic acid on the genes involved in starch synthesis in maize endosperm

(2011) Jiang Chen et al.   CARBOHYDRATE RESEARCH

Root Nodulation: A Paradigm for How Plant-Microbe Symbiosis Influences Host Developmental Pathways

(2011) Guilhem J. Desbrosses et al.   Cell Host & Microbe

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Hormonal control of nitrogen acquisition: roles of auxin, abscisic acid, and cytokinin

(2011) Takatoshi Kiba et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nitrate transceptor(s) in plants

(2011) A. Gojon et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mutation of the transcription factor LEAFY COTYLEDON 2 alters the chemical composition of Arabidopsis seeds, decreasing oil and protein content, while maintaining high levels of starch and sucrose in mature seeds

(2011) Juan Gabriel Angeles-Núñez et al.   JOURNAL OF PLANT PHYSIOLOGY

Inoculation- and Nitrate-Induced CLE Peptides of Soybean Control NARK-Dependent Nodule Formation

(2011) Dugald E. Reid et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Symbiotic Rhizobia Bacteria Trigger a Change in Localization and Dynamics of the Medicago truncatula Receptor Kinase LYK3

(2011) C. H. Haney et al.   PLANT CELL

Validation of reference genes for RT-qPCR normalization in common bean during biotic and abiotic stresses

(2011) Aline Borges et al.   PLANT CELL REPORTS

Epoxycarotenoid cleavage by NCED5 fine-tunes ABA accumulation and affects seed dormancy and drought tolerance with other NCED family members

(2011) Anne Frey et al.   PLANT JOURNAL

Polyamines Interact with Hydroxyl Radicals in Activating Ca2+ and K+ Transport across the Root Epidermal Plasma Membranes

(2011) I. Zepeda-Jazo et al.   PLANT PHYSIOLOGY

Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport

(2011) L.-Q. Chen et al.   SCIENCE

Synteny mapping between common bean and soybean reveals extensive blocks of shared loci

(2010) Phillip E McClean et al.   BMC GENOMICS

SoyDB: a knowledge database of soybean transcription factors

(2010) Zheng Wang et al.   BMC PLANT BIOLOGY

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Nitrate-Regulated Auxin Transport by NRT1.1 Defines a Mechanism for Nutrient Sensing in Plants

(2010) Gabriel Krouk et al.   DEVELOPMENTAL CELL

Molecular analysis of SCARECROW genes expressed in white lupin cluster roots

(2010) Laila Sbabou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

(2010) Jing Zhao et al.   MOLECULAR CELL

Sugar transporters for intercellular exchange and nutrition of pathogens

(2010) Li-Qing Chen et al.   NATURE

How Many Peas in a Pod? Legume Genes Responsible for Mutualistic Symbioses Underground

(2010) H. Kouchi et al.   PLANT AND CELL PHYSIOLOGY

Comprehensive Hormone Profiling in Developing Arabidopsis Seeds: Examination of the Site of ABA Biosynthesis, ABA Transport and Hormone Interactions

(2010) Yuri Kanno et al.   PLANT AND CELL PHYSIOLOGY

Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris

(2010) J.-Y. Lin et al.   PLANT CELL

TheMedicago truncatulaE3 Ubiquitin Ligase PUB1 Interacts with the LYK3 Symbiotic Receptor and Negatively Regulates Infection and Nodulation

(2010) Malick Mbengue et al.   PLANT CELL

Vapyrin, a gene essential for intracellular progression of arbuscular mycorrhizal symbiosis, is also essential for infection by rhizobia in the nodule symbiosis of Medicago truncatula

(2010) Jeremy D. Murray et al.   PLANT JOURNAL

Arabidopsis sucrose synthase 2 and 3 modulate metabolic homeostasis and direct carbon towards starch synthesis in developing seeds

(2010) Juan Gabriel Angeles-Núñez et al.   PLANTA

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Generation of Phaseolus vulgaris ESTs and investigation of their regulation upon Uromyces appendiculatus infection

(2009) Sandra Thibivilliers et al.   BMC PLANT BIOLOGY

Root uptake regulation: a central process for NPS homeostasis in plants

(2009) Alain Gojon et al.   CURRENT OPINION IN PLANT BIOLOGY

CERBERUS, a novel U-box protein containing WD-40 repeats, is required for formation of the infection thread and nodule development in the legume-Rhizobiumsymbiosis

(2009) Koji Yano et al.   PLANT JOURNAL

Plant flotillins are required for infection by nitrogen-fixing bacteria

(2009) C. H. Haney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Transcriptional Regulation of Storage Protein Synthesis During Dicotyledon Seed Filling

(2008) J. Verdier et al.   PLANT AND CELL PHYSIOLOGY

Lotus japonicus CASTOR and POLLUX Are Ion Channels Essential for Perinuclear Calcium Spiking in Legume Root Endosymbiosis

(2008) M. Charpentier et al.   PLANT CELL

Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling

(2008) Jérôme Verdier et al.   PLANT MOLECULAR BIOLOGY

How CYCLOPS keeps an eye on plant symbiosis

(2008) W. Capoen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RPG gene of Medicago truncatula controls Rhizobium-directed polar growth during infection

(2008) J.-F. Arrighi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE