An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

Transport and Metabolism in Legume-Rhizobia Symbioses

(2013) Michael Udvardi et al.   Annual Review of Plant Biology

Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011

(2013) E. Sallet et al.   DNA RESEARCH

Hydrogen peroxide-regulated genes in theMedicago truncatula-Sinorhizobium melilotisymbiosis

(2013) Emilie Andrio et al.   NEW PHYTOLOGIST

Cell- and Tissue-Specific Transcriptome Analyses of Medicago truncatula Root Nodules

(2013) Erik Limpens et al.   PLoS One

Control ofArabidopsisRoot Development

(2012) Jalean J. Petricka et al.   Annual Review of Plant Biology

Cytokinin Signaling Networks

(2012) Ildoo Hwang et al.   Annual Review of Plant Biology

Positive and negative regulation of cortical cell division during root nodule development in Lotus japonicus is accompanied by auxin response

(2012) T. Suzaki et al.   DEVELOPMENT

The pathway of auxin biosynthesis in plants

(2012) Y. Mano et al.   JOURNAL OF EXPERIMENTAL BOTANY

Tissue-Specific Transcriptome Analysis in Nodules of Lotus japonicus

(2012) Kojiro Takanashi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Nitric oxide (NO): a key player in the senescence of Medicago truncatula root nodules

(2012) Yvan Cam et al.   NEW PHYTOLOGIST

Medicago truncatulaDNF2 is a PI-PLC-XD-containing protein required for bacteroid persistence and prevention of nodule early senescence and defense-like reactions

(2012) Marie Bourcy et al.   NEW PHYTOLOGIST

Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes

(2012) Isabelle Damiani et al.   NEW PHYTOLOGIST

Two Direct Targets of Cytokinin Signaling Regulate Symbiotic Nodulation in Medicago truncatula

(2012) F. Ariel et al.   PLANT CELL

NODULE ROOT and COCHLEATA Maintain Nodule Development and Are Legume Orthologs of Arabidopsis BLADE-ON-PETIOLE Genes

(2012) J.-M. Couzigou et al.   PLANT CELL

In Planta Stage-Specific Fungal Gene Profiling Elucidates the Molecular Strategies of Fusarium graminearum Growing inside Wheat Coleoptiles

(2012) X.-W. Zhang et al.   PLANT CELL

Cell type-specific transcriptional profiling: implications for metabolite profiling

(2012) Eric D. Rogers et al.   PLANT JOURNAL

Expression Dynamics of the Medicago truncatula Transcriptome during the Symbiotic Interaction with Sinorhizobium meliloti: Which Role for Nitric Oxide?

(2012) A. Boscari et al.   PLANT PHYSIOLOGY

Medicago truncatula ERN Transcription Factors: Regulatory Interplay with NSP1/NSP2 GRAS Factors and Expression Dynamics throughout Rhizobial Infection

(2012) M. R. Cerri et al.   PLANT PHYSIOLOGY

WUSCHEL-RELATED HOMEOBOX5 Gene Expression and Interaction of CLE Peptides with Components of the Systemic Control Add Two Pieces to the Puzzle of Autoregulation of Nodulation

(2012) M. A. Osipova et al.   PLANT PHYSIOLOGY

Transcriptional Responses toward Diffusible Signals from Symbiotic Microbes Reveal MtNFP- and MtDMI3-Dependent Reprogramming of Host Gene Expression by Arbuscular Mycorrhizal Fungal Lipochitooligosaccharides

(2012) L. F. Czaja et al.   PLANT PHYSIOLOGY

A Powerful Method for Transcriptional Profiling of Specific Cell Types in Eukaryotes: Laser-Assisted Microdissection and RNA Sequencing

(2012) Marc W. Schmid et al.   PLoS One

Plant-activated bacterial receptor adenylate cyclases modulate epidermal infection in the Sinorhizobium meliloti-Medicago symbiosis

(2012) C. F. Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Rules of Engagement in the Legume-Rhizobial Symbiosis

(2011) Giles E.D. Oldroyd et al.   Annual Review of Genetics

Cytokinin Induction of Root Nodule Primordia in Lotus japonicus Is Regulated by a Mechanism Operating in the Root Cortex

(2011) Anne Birgitte Heckmann et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Invasion by Invitation: Rhizobial Infection in Legumes

(2011) Jeremy D. Murray   MOLECULAR PLANT-MICROBE INTERACTIONS

MtbHLH1, a bHLH transcription factor involved inMedicago truncatulanodule vascular patterning and nodule to plant metabolic exchanges

(2011) Laurence Godiard et al.   NEW PHYTOLOGIST

Transcriptional and post-transcriptional regulation of a NAC1 transcription factor in Medicago truncatula roots

(2011) Katrien D’haeseleer et al.   NEW PHYTOLOGIST

Nitric oxide is required for an optimal establishment of theMedicago truncatula-Sinorhizobium melilotisymbiosis

(2011) Jennifer del Giudice et al.   NEW PHYTOLOGIST

Arbuscule-containing and non-colonized cortical cells of mycorrhizal roots undergo extensive and specific reprogramming during arbuscular mycorrhizal development

(2011) Nicole Gaude et al.   PLANT JOURNAL

Dual involvement of a Medicago truncatula NAC transcription factor in root abiotic stress response and symbiotic nodule senescence

(2011) Axel de Zélicourt et al.   PLANT JOURNAL

Laser Microdissection Unravels Cell-Type-Specific Transcription in Arbuscular Mycorrhizal Roots, Including CAAT-Box Transcription Factor Gene Expression Correlating with Fungal Contact and Spread

(2011) C. Hogekamp et al.   PLANT PHYSIOLOGY

Transcription Reprogramming during Root Nodule Development in Medicago truncatula

(2011) Sandra Moreau et al.   PLoS One

Protection of Sinorhizobium against Host Cysteine-Rich Antimicrobial Peptides Is Critical for Symbiosis

(2011) Andreas F. Haag et al.   PLOS BIOLOGY

The organization of roots of dicotyledonous plants and the positions of control points

(2010) Thomas L. Rost   ANNALS OF BOTANY

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

The Response to Nitric Oxide of the Nitrogen-Fixing SymbiontSinorhizobium meliloti

(2010) Eliane Meilhoc et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A Medicago truncatula NADPH oxidase is involved in symbiotic nodule functioning

(2010) Daniel Marino et al.   NEW PHYTOLOGIST

TheMedicago truncatulaE3 Ubiquitin Ligase PUB1 Interacts with the LYK3 Symbiotic Receptor and Negatively Regulates Infection and Nodulation

(2010) Malick Mbengue et al.   PLANT CELL

MtCRE1-dependent cytokinin signaling integrates bacterial and plant cues to coordinate symbiotic nodule organogenesis in Medicago truncatula

(2010) Julie Plet et al.   PLANT JOURNAL

Comparison of Developmental and Stress-Induced Nodule Senescence in Medicago truncatula

(2010) J. C. Perez Guerra et al.   PLANT PHYSIOLOGY

Differentiation of Symbiotic Cells and Endosymbionts in Medicago truncatula Nodulation Are Coupled to Two Transcriptome-Switches

(2010) Nicolas Maunoury et al.   PLoS One

A remorin protein interacts with symbiotic receptors and regulates bacterial infection

(2010) B. Lefebvre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Nodule-Specific Protein Secretory Pathway Required for Nitrogen-Fixing Symbiosis

(2010) D. Wang et al.   SCIENCE

Plant Peptides Govern Terminal Differentiation of Bacteria in Symbiosis

(2010) W. Van de Velde et al.   SCIENCE

The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus

(2010) Lene H. Madsen et al.   Nature Communications

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Transcriptomic Analysis of Rhizobium leguminosarum Biovar viciae in Symbiosis with Host Plants Pisum sativum and Vicia cracca

(2009) R. Karunakaran et al.   JOURNAL OF BACTERIOLOGY

Transcriptome analysis by strand-specific sequencing of complementary DNA

(2009) Dmitri Parkhomchuk et al.   NUCLEIC ACIDS RESEARCH

Dissection of Symbiosis and Organ Development by Integrated Transcriptome Analysis of Lotus japonicus Mutant and Wild-Type Plants

(2009) Niels Høgslund et al.   PLoS One

APC/CCCS52Acomplexes control meristem maintenance in theArabidopsisroot

(2009) Marleen Vanstraelen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription ofENOD8inMedicago truncatulaNodules Directs ENOD8 Esterase to Developing and Mature Symbiosomes

(2008) Laurent Coque et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

EFD Is an ERF Transcription Factor Involved in the Control of Nodule Number and Differentiation in Medicago truncatula

(2008) T. Vernie et al.   PLANT CELL

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL