From Molecules to Mechanisms: Functional Proteomics and Its Application to Renal Tubule Physiology
出版年份 2018 全文链接
标题
From Molecules to Mechanisms: Functional Proteomics and Its Application to Renal Tubule Physiology
作者
关键词
-
出版物
PHYSIOLOGICAL REVIEWS
Volume 98, Issue 4, Pages 2571-2606
出版商
American Physiological Society
发表日期
2018-09-05
DOI
10.1152/physrev.00057.2017
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Identification of UT-A1- and AQP2-interacting proteins in rat inner medullary collecting duct
- (2018) Chung-Lin Chou et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Single-tubule RNA-Seq uncovers signaling mechanisms that defend against hyponatremia in SIADH
- (2018) Jae Wook Lee et al. KIDNEY INTERNATIONAL
- Single-nephron proteomes connect morphology and function in proteinuric kidney disease
- (2018) Martin Höhne et al. KIDNEY INTERNATIONAL
- Points of Significance: Statistics versus machine learning
- (2018) Danilo Bzdok et al. NATURE METHODS
- Vasopressin-induced serine 269 phosphorylation reduces Sipa1l1 (signal-induced proliferation-associated 1 like 1)-mediated aquaporin-2 endocytosis
- (2017) Po-Jen Wang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Hypercalcemia induces targeted autophagic degradation of aquaporin-2 at the onset of nephrogenic diabetes insipidus
- (2017) Sookkasem Khositseth et al. KIDNEY INTERNATIONAL
- Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows
- (2017) Kenneth Verheggen et al. MASS SPECTROMETRY REVIEWS
- Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics
- (2017) Nils A. Kulak et al. MOLECULAR & CELLULAR PROTEOMICS
- Confronting the catalytic dark matter encoded by sequenced genomes
- (2017) Kenneth W. Ellens et al. NUCLEIC ACIDS RESEARCH
- Systems-level identification of PKA-dependent signaling in epithelial cells
- (2017) Kiyoshi Isobe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq
- (2017) Lihe Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Quantitative deep mapping of the cultured podocyte proteome uncovers shifts in proteostatic mechanisms during differentiation
- (2016) Markus M. Rinschen et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- On the Dependency of Cellular Protein Levels on mRNA Abundance
- (2016) Yansheng Liu et al. CELL
- High-throughput discovery of novel developmental phenotypes
- (2016) Mary E. Dickinson et al. NATURE
- Mass-spectrometric exploration of proteome structure and function
- (2016) Ruedi Aebersold et al. NATURE
- Atmospheric pressure MALDI mass spectrometry imaging of tissues and cells at 1.4-μm lateral resolution
- (2016) Mario Kompauer et al. NATURE METHODS
- Ensembl 2017
- (2016) Bronwen L. Aken et al. NUCLEIC ACIDS RESEARCH
- UniProt: the universal protein knowledgebase
- (2016) NUCLEIC ACIDS RESEARCH
- Proteomic profiling of nuclear fractions from native renal inner medullary collecting duct cells
- (2016) Christina M. Pickering et al. PHYSIOLOGICAL GENOMICS
- Design and synthesis of a minimal bacterial genome
- (2016) C. A. Hutchison et al. SCIENCE
- Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells
- (2016) Sara C. Larsen et al. Science Signaling
- Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells
- (2016) Sara C. Larsen et al. Science Signaling
- Now, More Than Ever, Proteomics Needs Better Chromatography
- (2016) Evgenia Shishkova et al. Cell Systems
- Deep proteomic profiling of vasopressin-sensitive collecting duct cells. I. Virtual Western blots and molecular weight distributions
- (2015) Chin-Rang Yang et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Deep proteomic profiling of vasopressin-sensitive collecting duct cells. II. Bioinformatic analysis of vasopressin signaling
- (2015) Chin-Rang Yang et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Capillary isoelectric focusing-mass spectrometry: Coupling strategies and applications
- (2015) Jens Hühner et al. ELECTROPHORESIS
- The potential clinical impact of the release of two drafts of the human proteome
- (2015) Iakes Ezkurdia et al. Expert Review of Proteomics
- Defining cell types and states with single-cell genomics
- (2015) Cole Trapnell GENOME RESEARCH
- Deep Sequencing in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes
- (2015) J. W. Lee et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma
- (2015) Susan E. Abbatiello et al. MOLECULAR & CELLULAR PROTEOMICS
- High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics
- (2015) Sean J Humphrey et al. NATURE BIOTECHNOLOGY
- Multidimensional proteomics for cell biology
- (2015) Mark Larance et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- Comparative phosphoproteomic analysis of mammalian glomeruli reveals conserved podocin C-terminal phosphorylation as a determinant of slit diaphragm complex architecture
- (2015) Markus M. Rinschen et al. PROTEOMICS
- Proteomic analysis of the kidney filtration barrier-Problems and perspectives
- (2015) Markus M. Rinschen et al. Proteomics Clinical Applications
- Mechanisms Regulating Protein Localization
- (2015) Nicholas C. Bauer et al. TRAFFIC
- A Systems Level Analysis of Vasopressin-mediated Signaling Networks in Kidney Distal Convoluted Tubule Cells
- (2015) Lei Cheng et al. Scientific Reports
- Autophagic degradation of aquaporin-2 is an early event in hypokalemia-induced nephrogenic diabetes insipidus
- (2015) Sookkasem Khositseth et al. Scientific Reports
- Mapping the H+ (V)-ATPase interactome: identification of proteins involved in trafficking, folding, assembly and phosphorylation
- (2015) Maria Merkulova et al. Scientific Reports
- Biological Databases for Human Research
- (2015) Dong Zou et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Use of LC-MS/MS and Bayes' theorem to identify protein kinases that phosphorylate aquaporin-2 at Ser256
- (2014) Davis Bradford et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Collecting Duct Principal Cell Transport Processes and Their Regulation
- (2014) D. Pearce et al. Clinical Journal of the American Society of Nephrology
- Off-Line High-pH Reversed-Phase Fractionation for In-Depth Phosphoproteomics
- (2014) Tanveer S. Batth et al. JOURNAL OF PROTEOME RESEARCH
- Enhanced FASP (eFASP) to Increase Proteome Coverage and Sample Recovery for Quantitative Proteomic Experiments
- (2014) Jonathan Erde et al. JOURNAL OF PROTEOME RESEARCH
- Laying the groundwork for proteomics: Mass spectrometry from 1958 to 1988
- (2014) Klaus Biemann Journal of Proteomics
- MALDI imaging mass spectrometry: Spatial molecular analysis to enable a new age of discovery
- (2014) Megan M. Gessel et al. Journal of Proteomics
- Phosphoproteomic Analysis Reveals Regulatory Mechanisms at the Kidney Filtration Barrier
- (2014) M. M. Rinschen et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- A draft map of the human proteome
- (2014) Min-Sik Kim et al. NATURE
- Mass-spectrometry-based draft of the human proteome
- (2014) Mathias Wilhelm et al. NATURE
- Onco-proteogenomics: cancer proteomics joins forces with genomics
- (2014) Javier A Alfaro et al. NATURE METHODS
- Functionally Enigmatic Genes: A Case Study of the Brain Ignorome
- (2014) Ashutosh K. Pandey et al. PLoS One
- Transcriptional Regulation and Its Misregulation in Disease
- (2013) Tong Ihn Lee et al. CELL
- Proximal Tubule Function and Response to Acidosis
- (2013) N. P. Curthoys et al. Clinical Journal of the American Society of Nephrology
- Determination of an Angiotensin II-regulated Proteome in Primary Human Kidney Cells by Stable Isotope Labeling of Amino Acids in Cell Culture (SILAC)
- (2013) Ana Konvalinka et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Redox Proteome
- (2013) Young-Mi Go et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- SAHA Treatment Reveals the Link between Histone Lysine Acetylation and Proteome in Nonsmall Cell Lung Cancer A549 Cells
- (2013) Quan Wu et al. JOURNAL OF PROTEOME RESEARCH
- Proteome-Wide Measurement of Protein Half-Lives and Translation Rates in Vasopressin-Sensitive Collecting Duct Cells
- (2013) P. C. Sandoval et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Western BlotsversusSelected Reaction Monitoring Assays: Time to Turn the Tables?
- (2013) Ruedi Aebersold et al. MOLECULAR & CELLULAR PROTEOMICS
- Large-scale identification of ubiquitination sites by mass spectrometry
- (2013) Namrata D Udeshi et al. Nature Protocols
- Assessment of the Effect of 24-Hour Aldosterone Administration on Protein Abundance in Fluorescence-Sorted Mouse Distal Renal Tubules by Mass Spectrometry
- (2013) Thomas B. Jensen et al. NEPHRON PHYSIOLOGY
- Renal Cells Express Different Forms of Vimentin: The Independent Expression Alteration of these Forms is Important in Cell Resistance to Osmotic Stress and Apoptosis
- (2013) Bettina S. Buchmaier et al. PLoS One
- Quantitative apical membrane proteomics reveals vasopressin-induced actin dynamics in collecting duct cells
- (2013) C.-S. Loo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Proteomic profiling of the mitochondrial inner membrane of rat renal proximal convoluted tubules
- (2013) Dana M. Freund et al. PROTEOMICS
- Resilience in the proteomics data ecosystem: How the field cares for its data
- (2013) Lennart Martens PROTEOMICS
- Definitions of terms relating to mass spectrometry (IUPAC Recommendations 2013)
- (2013) Kermit K. Murray et al. PURE AND APPLIED CHEMISTRY
- Lysine Succinylation Is a Frequently Occurring Modification in Prokaryotes and Eukaryotes and Extensively Overlaps with Acetylation
- (2013) Brian T. Weinert et al. Cell Reports
- Quantitative phosphoproteomics in nuclei of vasopressin-sensitive renal collecting duct cells
- (2012) Steven J. Bolger et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
- (2012) Marcus Bantscheff et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis
- (2012) Feng Yang et al. Expert Review of Proteomics
- Proteins of Unknown Function in the Protein Data Bank (PDB): An Inventory of True Uncharacterized Proteins and Computational Tools for Their Analysis
- (2012) Nurul Nadzirin et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Uncovering the role of genomic “dark matter” in human disease
- (2012) Lance Martin et al. JOURNAL OF CLINICAL INVESTIGATION
- Quantitative Proteomics Identifies Vasopressin-Responsive Nuclear Proteins in Collecting Duct Cells
- (2012) L. K. Schenk et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Lysine Succinylation and Lysine Malonylation in Histones
- (2012) Zhongyu Xie et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Proteomic Quantification on Quadrupole-Orbitrap Mass Spectrometer
- (2012) Sebastien Gallien et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
- (2012) Ludovic C. Gillet et al. MOLECULAR & CELLULAR PROTEOMICS
- Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions
- (2012) Paola Picotti et al. NATURE METHODS
- Next-generation proteomics: towards an integrative view of proteome dynamics
- (2012) A. F. Maarten Altelaar et al. NATURE REVIEWS GENETICS
- Mitochondrial proteomic analysis reveals deficiencies in oxygen utilization in medullary thick ascending limb of Henle in the Dahl salt-sensitive rat
- (2012) Nadezhda N. Zheleznova et al. PHYSIOLOGICAL GENOMICS
- Large-scale phosphoproteomic analysis of membrane proteins in renal proximal and distal tubule
- (2011) Marina Feric et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Large-scale phosphotyrosine proteomic profiling of rat renal collecting duct epithelium reveals predominance of proteins involved in cell polarity determination
- (2011) Boyang Zhao et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Calreticulin is crucial for calcium homeostasis mediated adaptation and survival of thick ascending limb of Henle's loop cells under osmotic stress
- (2011) Asima Bibi et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Regulation of the NKCC2 ion cotransporter by SPAK-OSR1-dependent and -independent pathways
- (2011) C. Richardson et al. JOURNAL OF CELL SCIENCE
- Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
- (2011) Jürgen Cox et al. JOURNAL OF PROTEOME RESEARCH
- Spectroscopic Evidence for an Oxazolone Structure in Anionic b-Type Peptide Fragments
- (2011) Josipa Grzetic et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Phosphoproteomic analysis of AT1 receptor-mediated signaling responses in proximal tubules of angiotensin II-induced hypertensive rats
- (2011) Xiao C. Li et al. KIDNEY INTERNATIONAL
- Dynamics of the G Protein-coupled Vasopressin V2 Receptor Signaling Network Revealed by Quantitative Phosphoproteomics
- (2011) Jason D. Hoffert et al. MOLECULAR & CELLULAR PROTEOMICS
- Phosphoproteomics for the Masses
- (2010) Paul A. Grimsrud et al. ACS Chemical Biology
- Regulation of AQP2 localization by S256 and S261 phosphorylation and ubiquitination
- (2010) Grazia Tamma et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Reciprocal Regulation of Aquaporin-2 Abundance and Degradation by Protein Kinase A and p38-MAP Kinase
- (2010) P. I. Nedvetsky et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Phosphoproteomic Profiling Reveals Vasopressin-Regulated Phosphorylation Sites in Collecting Duct
- (2010) A. D. Bansal et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Quantitative Protein and mRNA Profiling Shows Selective Post-Transcriptional Control of Protein Expression by Vasopressin in Kidney Cells
- (2010) Sookkasem Khositseth et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor–dependent signaling pathways in renal collecting duct cells
- (2010) Markus M. Rinschen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Quantitative phosphoproteomic analysis reveals cAMP/vasopressin-dependent signaling pathways in native renal thick ascending limb cells
- (2010) R. Gunaratne et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulation of Cellular Metabolism by Protein Lysine Acetylation
- (2010) S. Zhao et al. SCIENCE
- iTRAQ Underestimation in Simple and Complex Mixtures: “The Good, the Bad and the Ugly”
- (2009) Saw Yen Ow et al. JOURNAL OF PROTEOME RESEARCH
- Universal sample preparation method for proteome analysis
- (2009) Jacek R Wiśniewski et al. NATURE METHODS
- Proteomic profiling of nuclei from native renal inner medullary collecting duct cells using LC-MS/MS
- (2009) Dmitry Tchapyjnikov et al. PHYSIOLOGICAL GENOMICS
- Systems-level analysis of cell-specific AQP2 gene expression in renal collecting duct
- (2009) M.-J. Yu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
- (2009) C. Choudhary et al. SCIENCE
- Phosphorylation of β-catenin by PKA promotes ATP-induced proliferation of vascular smooth muscle cells
- (2008) Sebastien Taurin et al. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
- Vasopressin-stimulated Increase in Phosphorylation at Ser269Potentiates Plasma Membrane Retention of Aquaporin-2
- (2008) Jason D. Hoffert et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Serine 269 phosphorylated aquaporin-2 is targeted to the apical membrane of collecting duct principal cells
- (2008) Hanne B. Moeller et al. KIDNEY INTERNATIONAL
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- Acute regulation of aquaporin-2 phosphorylation at Ser-264 by vasopressin
- (2008) R. A. Fenton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now