PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets

propy: a tool to generate various modes of Chou’s PseAAC

(2013) Dong-Sheng Cao et al.   BIOINFORMATICS

Using radial basis function on the general form of Chou's pseudo amino acid composition and PSSM to predict subcellular locations of proteins with both single and multiple sites

(2013) Chao Huang et al.   BIOSYSTEMS

Predict Subcellular Locations of Singleplex and Multiplex Proteins by Semi-Supervised Learning and Dimension-Reducing General Mode of Chou's PseAAC

(2013) Eakasit Pacharawongsakda et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

A Multilabel Model Based on Chou’s Pseudo–Amino Acid Composition for Identifying Membrane Proteins with Both Single and Multiple Functional Types

(2013) Chao Huang et al.   JOURNAL OF MEMBRANE BIOLOGY

Using the concept of Chou's pseudo amino acid composition to predict protein solubility: An approach with entropies in information theory

(2013) Niu Xiaohui et al.   JOURNAL OF THEORETICAL BIOLOGY

Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition

(2013) Guo-Liang Fan et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions

(2013) Chao Huang et al.   JOURNAL OF THEORETICAL BIOLOGY

GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition

(2013) Shibiao Wan et al.   JOURNAL OF THEORETICAL BIOLOGY

A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC

(2013) Guo-Sheng Han et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting anticancer peptides with Chou′s pseudo amino acid composition and investigating their mutagenicity via Ames test

(2013) Zohre Hajisharifi et al.   JOURNAL OF THEORETICAL BIOLOGY

Accurate prediction of protein structural classes by incorporating predicted secondary structure information into the general form of Chou's pseudo amino acid composition

(2013) Liang Kong et al.   JOURNAL OF THEORETICAL BIOLOGY

Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation

(2013) Bin Liu et al.   Molecular Informatics

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Prediction of Essential Proteins in Prokaryotes by Incorporating Various Physico-chemical Features into the General form of Chou’s Pseudo Amino Acid Composition

(2013) Aditya Narayan Sarangi et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Antibacterial Peptides by the Concept of Chou's Pseudo-amino Acid Composition and Machine Learning Methods

(2013) Maede Khosravian et al.   PROTEIN AND PEPTIDE LETTERS

Using ensemble SVM to identify human GPCRs N-linked glycosylation sites based on the general form of Chou's PseAAC

(2013) H.-L. Xie et al.   PROTEIN ENGINEERING DESIGN & SELECTION

An alignment-free method to find similarity among protein sequences via the general form of Chou’s pseudo amino acid composition

(2013) M.K. Gupta et al.   SAR AND QSAR IN ENVIRONMENTAL RESEARCH

SubMito-PSPCP: Predicting Protein Submitochondrial Locations by Hybridizing Positional Specific Physicochemical Properties with Pseudoamino Acid Compositions

(2013) Pufeng Du et al.   Biomed Research International

PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions

(2012) Pufeng Du et al.   ANALYTICAL BIOCHEMISTRY

Virus-mPLoc: A Fusion Classifier for Viral Protein Subcellular Location Prediction by Incorporating Multiple Sites

(2012) Hong-Bin Shen et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Subcellular localization prediction for human internal and organelle membrane proteins with projected gene ontology scores

(2012) Pufeng Du et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning

(2012) Suyu Mei   JOURNAL OF THEORETICAL BIOLOGY

Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou’s pseudo amino acid composition

(2012) Yen-Kuang Chen et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of Allergenic Proteins by Means of the Concept of Chou's Pseudo Amino Acid Composition and a Machine Learning Approach

(2012) Hassan Mohabatkar et al.   Medicinal Chemistry

Identifying protein quaternary structural attributes by incorporating physicochemical properties into the general form of Chou's PseAAC via discrete wavelet transform

(2012) Xing-Yu Sun et al.   Molecular BioSystems

A Systematic Prediction of Multiple Drug-Target Interactions from Chemical, Genomic, and Pharmacological Data

(2012) Hua Yu et al.   PLoS One

Predicting Protein Fold Types by the General Form of Chou's Pseudo Amino Acid Composition: Approached from Optimal Feature Extractions

(2012) Lei Liu et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Protein-Protein Interactions by Combing Various Sequence- Derived Features into the General Form of Chou’s Pseudo Amino Acid Composition

(2012) Xiao-Wei Zhao et al.   PROTEIN AND PEPTIDE LETTERS

Identifying GPCRs and their Types with Chou's Pseudo Amino Acid Composition: An Approach from Multi-scale Energy Representation and Position Specific Scoring Matrix

(2012) Zia-ur-Rehman et al.   PROTEIN AND PEPTIDE LETTERS

Predicting the Classification of Transcription Factors by Incorporating their Binding Site Properties into a Novel Mode of Chou's Pseudo Amino Acid Composition

(2012) Liang-Yun Ren et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Protein Solubility by the General Form of Chou’s Pseudo Amino Acid Composition: Approached from Chaos Game Representation and Fractal Dimension

(2012) Xiao-Hui Niu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Protein Subcellular Multi-Localization Based on the General form of Chou’s Pseudo Amino Acid Composition

(2012) Li-Qi Li et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Protein Structural Class by Incorporating Patterns of Over- Represented k-mers into the General form of Chou’s PseAAC

(2012) Yu-Fang Qin et al.   PROTEIN AND PEPTIDE LETTERS

Dual-Layer Wavelet SVM for Predicting Protein Structural Class Via the General Form of Chou’s Pseudo Amino Acid Composition

(2012) Chao Chen et al.   PROTEIN AND PEPTIDE LETTERS

Incorporating Secondary Features into the General form of Chou's PseAAC for Predicting Protein Structural Class

(2012) Bo Liao et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Viral Protein Subcellular Localization with Chou's Pseudo Amino Acid Composition and Imbalance-Weighted Multi-Label K-Nearest Neighbor Algorithm

(2012) Jun-Zhe Cao et al.   PROTEIN AND PEPTIDE LETTERS

Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou’s PseAAC

(2012) Maqsood Hayat et al.   PROTEIN AND PEPTIDE LETTERS

Predicting protein submitochondria locations by combining different descriptors into the general form of Chou’s pseudo amino acid composition

(2011) Guo-Liang Fan et al.   AMINO ACIDS

Wavelet images and Chou’s pseudo amino acid composition for protein classification

(2011) Loris Nanni et al.   AMINO ACIDS

MemLoci: predicting subcellular localization of membrane proteins in eukaryotes

(2011) Andrea Pierleoni et al.   BIOINFORMATICS

Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

(2011) Loris Nanni et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition

(2011) Jian-Ding Qiu et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine

(2011) Hassan Mohabatkar et al.   JOURNAL OF THEORETICAL BIOLOGY

Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization

(2011) Suyu Mei   JOURNAL OF THEORETICAL BIOLOGY

Using a Novel AdaBoost Algorithm and Chous Pseudo Amino Acid Composition for Predicting Protein Subcellular Localization

(2011) Jie Lin et al.   PROTEIN AND PEPTIDE LETTERS

A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

(2010) Sitanshu Sekhar Sahu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Supersecondary structure prediction using Chou's pseudo amino acid composition

(2010) Dongsheng Zou et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets

(2010) D.N. Georgiou et al.   JOURNAL OF THEORETICAL BIOLOGY

SecretP: Identifying bacterial secreted proteins by fusing new features into Chou’s pseudo-amino acid composition

(2010) Lezheng Yu et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Using the Concept of Chous Pseudo Amino Acid Composition to Predict Enzyme Family Classes: An Approach with Support Vector Machine Based on Discrete Wavelet Transform

(2010) Jian-Ding Qiu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of G-Protein-Coupled Receptor Classes in Low Homology Using Chous Pseudo Amino Acid Composition with Approximate Entropy and Hydrophobicity Patterns

(2010) Quan Gu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition

(2010) Hassan Mohabatkar   PROTEIN AND PEPTIDE LETTERS

Prediction of Subcellular Localization of Apoptosis Protein Using Chou’s Pseudo Amino Acid Composition

(2009) Hao Lin et al.   ACTA BIOTHEORETICA

Prediction of G-protein-coupled receptor classes based on the concept of Chou’s pseudo amino acid composition: An approach from discrete wavelet transform

(2009) Jian-Ding Qiu et al.   ANALYTICAL BIOCHEMISTRY

Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach

(2009) Yu-hong Zeng et al.   JOURNAL OF THEORETICAL BIOLOGY

Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses

(2009) Maryam Esmaeili et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of Cell Wall Lytic Enzymes Using Chous Amphiphilic Pseudo Amino Acid Composition

(2009) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Protein Secondary Structure Content by Using the Concept of Chous Pseudo Amino Acid Composition and Support Vector Machine

(2009) Chao Chen et al.   PROTEIN AND PEPTIDE LETTERS

Using Chou’s pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location

(2008) Xiaoying Jiang et al.   AMINO ACIDS

Using Chou’s pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach

(2008) Shao-Wu Zhang et al.   AMINO ACIDS

Prediction of protein structural classes by Chou’s pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis

(2008) Zhan-Chao Li et al.   AMINO ACIDS

Genetic programming for creating Chou’s pseudo amino acid based features for submitochondria localization

(2008) Loris Nanni et al.   AMINO ACIDS

AnnotationSketch: a genome annotation drawing library

(2008) Sascha Steinbiss et al.   BIOINFORMATICS

Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo-amino acid composition

(2008) Guang-Ya Zhang et al.   JOURNAL OF THEORETICAL BIOLOGY

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition

(2008) Hao Lin   JOURNAL OF THEORETICAL BIOLOGY

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

(2008) D.N. Georgiou et al.   JOURNAL OF THEORETICAL BIOLOGY

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species

(2008) KiYoung Lee et al.   NUCLEIC ACIDS RESEARCH

Predicting Lipase Types by Improved Chous Pseudo-Amino Acid Composition

(2008) Guang-Ya Zhang et al.   PROTEIN AND PEPTIDE LETTERS

Using the Concept of Chous Pseudo Amino Acid Composition to Predict Apoptosis Proteins Subcellular Location: An Approach by Approximate Entropy

(2008) Xiaoying Jian et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Protein Subcellular Location Using Chous Pseudo Amino Acid Composition and Improved Hybrid Approach

(2008) Feng-Min Li et al.   PROTEIN AND PEPTIDE LETTERS

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY