Discovery and validation of genic single nucleotide polymorphisms in the Pacific oysterCrassostrea gigas

Is horizontal transmission of the Ostreid herpesvirus OsHV-1 in Crassostrea gigas affected by unselected or selected survival status in adults to juveniles?

(2013) Dégremont Lionel et al.   AQUACULTURE

Heritability estimates for growth-related traits in the Pacific oyster (Crassostrea gigas) using a molecular pedigree

(2013) Ning Kong et al.   AQUACULTURE RESEARCH

Development and Validation of Single-nucleotide Polymorphism Markers in the Pacific Oyster,Crassostrea gigas,Using High-resolution Melting Analysis

(2013) Xiaoxiao Zhong et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides ) from different thermal environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

(2013) Jie Meng et al.   PLoS One

Mussel and oyster culture in Saldanha Bay, South Africa: potential for sustainable growth, development and employment creation

(2013) David Olivier et al.   Food Security

Genetic Diversity of Cultured, Naturalized, and Native Pacific Oysters,Crassostrea Gigas, Determined from Multiplexed Microsatellite Markers

(2012) Penny A. Miller et al.   JOURNAL OF SHELLFISH RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Arabidopsis thaliana as a model for the genetics of local adaptation

(2012) Brandon Gaut   NATURE GENETICS

Development of Genomic Resources for Pacific Herring through Targeted Transcriptome Pyrosequencing

(2012) Steven B. Roberts et al.   PLoS One

Application of High-Resolution DNA Melting for Genotyping in Lepidopteran Non-Model Species: Ostrinia furnacalis (Crambidae)

(2012) FengBo Li et al.   PLoS One

SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)

(2012) Sarah J. Helyar et al.   PLoS One

Development of 101 novel EST-derived single nucleotide polymorphism markers for Zhikong scallop (Chlamys farreri)

(2012) Jiqin Li et al.   Journal of Ocean University of China

Detection of Type 1 Ostreid Herpes variant (OsHV-1 μvar) with no associated mortality in French-origin Pacific cupped oyster Crassostrea gigas farmed in Italy

(2011) William G. Dundon et al.   AQUACULTURE

First report of OsHV-1 microvar in Pacific oyster (Crassostrea gigas) cultured in Spain

(2011) A. Roque et al.   AQUACULTURE

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

(2011) Barbara Feldmeyer et al.   BMC GENOMICS

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

Development, characterization, and inheritance of 113 novel EST-SSR markers in the Pacific oyster (Crassostrea gigas)

(2011) Qi Li et al.   Genes & Genomics

Quantitative Trait Locus Analysis of Stage-Specific Inbreeding Depression in the Pacific OysterCrassostrea gigas

(2011) Louis V. Plough et al.   GENETICS

Sequencing technologies and genome sequencing

(2011) Chandra Shekhar Pareek et al.   JOURNAL OF APPLIED GENETICS

A single bio-energetics growth and reproduction model for the oyster Crassostrea gigas in six Atlantic ecosystems

(2011) Marianne Alunno-Bruscia et al.   JOURNAL OF SEA RESEARCH

Genetic Mapping and QTL Analysis of Growth-Related Traits in the Pacific Oyster

(2011) Xiang Guo et al.   MARINE BIOTECHNOLOGY

Microarray Analysis Highlights Immune Response of Pacific Oysters as a Determinant of Resistance to Summer Mortality

(2011) Elodie Fleury et al.   MARINE BIOTECHNOLOGY

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Development of 44 gene-based SNP markers in Zhikong scallop, Chlamys farreri

(2011) Guodong Jiang et al.   Conservation Genetics Resources

Summer mortality of the Pacific oyster, Crassostrea gigas, in the Irish Sea: The influence of growth, biochemistry and gametogenesis

(2010) Elizabeth Cotter et al.   AQUACULTURE

Gene expression profiling of genetically determined growth variation in bivalve larvae (Crassostrea gigas)

(2010) E. Meyer et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Development of Type I Genetic Markers from Expressed Sequence Tags in Highly Polymorphic Species

(2010) Woo-Jin Kim et al.   MARINE BIOTECHNOLOGY

Development of gene-targeted SNP markers for genomic mapping in Pacific abalone Haliotis discus hannai Ino

(2010) Haigang Qi et al.   MOLECULAR BIOLOGY REPORTS

De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits

(2010) Shuang Chen et al.   PLoS One

Characterization of 20 single nucleotide polymorphism markers in the Pacific oyster (Crassostrea gigas)

(2009) J. Bai et al.   ANIMAL GENETICS

Summer mortality of hatchery-produced Pacific oyster spat (Crassostrea gigas). II. Response to selection for survival and its influence on growth and yield

(2009) Lionel Dégremont et al.   AQUACULTURE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Microarray-Based Identification of Gonad Transcripts Differentially Expressed Between Lines of Pacific Oyster Selected to Be Resistant or Susceptible to Summer Mortality

(2009) Elodie Fleury et al.   MARINE BIOTECHNOLOGY

High-throughput SNP genotyping with the GoldenGate assay in maize

(2009) Jianbing Yan et al.   MOLECULAR BREEDING

Identification and characterization of 18 novel polymorphic microsatellite makers derived from expressed sequence tags in the Pacific oysterCrassostrea gigas

(2009) C. SAUVAGE et al.   Molecular Ecology Resources

High-resolution melting analysis (HRMA): a highly sensitive inexpensive genotyping alternative for population studies

(2009) B. L. SMITH et al.   Molecular Ecology Resources

Simple Sequence Repeat Polymorphisms (SSRPs) for Evaluation of Molecular Diversity and Germplasm Classification of Minor Crops

(2009) Yong-Jin Park et al.   MOLECULES

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

Development of Fifty-one novel EST-SSR loci in the Pacific oyster, Crassostrea gigas by data mining from the public EST database

(2009) Ziniu Yu et al.   Conservation Genetics Resources

Development and characterization of microsatellite markers for the Pacific Oyster Crassostrea gigas

(2009) Haigang Qi et al.   Conservation Genetics Resources

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Influence of food density and temperature on ingestion, growth and settlement of Pacific oyster larvae, Crassostrea gigas

(2008) B. Rico-Villa et al.   AQUACULTURE

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Exploiting EST Databases for the Development and Characterization of EST–SSRs in the Pacific Oyster (Crassostrea gigas)

(2008) Hong Yu et al.   JOURNAL OF HEREDITY

Base-pair neutral homozygotes can be discriminated by calibrated high-resolution melting of small amplicons

(2008) C. N. Gundry et al.   NUCLEIC ACIDS RESEARCH