Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
出版年份 2011 全文链接
标题
Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
作者
关键词
-
出版物
BMC GENOMICS
Volume 12, Issue 1, Pages -
出版商
Springer Nature
发表日期
2011-04-23
DOI
10.1186/1471-2164-12-199
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes
- (2012) S Samuel Yang et al. BMC GENOMICS
- De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq
- (2011) Eshchar Mizrachi et al. BMC GENOMICS
- The Genetics of Lignin Biosynthesis: Connecting Genotype to Phenotype
- (2010) Nicholas D. Bonawitz et al. Annual Review of Genetics
- Towards reliable isoform quantification using RNA-SEQ data
- (2010) Brian E Howard et al. BMC BIOINFORMATICS
- Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip(R) Soybean Genome Array: optimizing analysis by masking biased probes
- (2010) S SAMUEL Yang et al. BMC PLANT BIOLOGY
- RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
- (2010) Andrew J Severin et al. BMC PLANT BIOLOGY
- Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
- (2010) T. Lu et al. GENOME RESEARCH
- Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
- (2010) V. M. Bruno et al. GENOME RESEARCH
- Optimization of de novo transcriptome assembly from next-generation sequencing data
- (2010) Y. Surget-Groba et al. GENOME RESEARCH
- Sucrose Synthase is an Integral Component of the Cellulose Synthesis Machinery
- (2010) S. Fujii et al. PLANT AND CELL PHYSIOLOGY
- Shotguns and SNPs: how fast and cheap sequencing is revolutionizing plant biology
- (2010) Steven D. Rounsley et al. PLANT JOURNAL
- Understanding Lignification: Challenges Beyond Monolignol Biosynthesis
- (2010) X. Li et al. PLANT PHYSIOLOGY
- De novo transcriptome assembly with ABySS
- (2009) I. Birol et al. BIOINFORMATICS
- DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
- (2009) Likun Wang et al. BIOINFORMATICS
- Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing
- (2009) Wei Wang et al. BMC GENOMICS
- Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species
- (2009) Diana Bellin et al. BMC GENOMICS
- Comparison of next generation sequencing technologies for transcriptome characterization
- (2009) P Kerr Wall et al. BMC GENOMICS
- RNA-seq: from technology to biology
- (2009) Samuel Marguerat et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond
- (2009) Ryan Lister et al. CURRENT OPINION IN PLANT BIOLOGY
- RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing
- (2009) Brian T. Wilhelm et al. METHODS
- Benchmarking Next-Generation Transcriptome Sequencing for Functional and Evolutionary Genomics
- (2009) J. G. Gibbons et al. MOLECULAR BIOLOGY AND EVOLUTION
- Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing
- (2009) Martin Trick et al. PLANT BIOTECHNOLOGY JOURNAL
- MATE Transporters Facilitate Vacuolar Uptake of Epicatechin 3'-O-Glucoside for Proanthocyanidin Biosynthesis in Medicago truncatula and Arabidopsis
- (2009) J. Zhao et al. PLANT CELL
- The WRKY6 Transcription Factor Modulates PHOSPHATE1 Expression in Response to Low Pi Stress in Arabidopsis
- (2009) Y.-F. Chen et al. PLANT CELL
- Single-Feature Polymorphism Discovery in the Transcriptome of Tetraploid Alfalfa
- (2009) S. Samuel Yang et al. Plant Genome
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
- (2008) Evandro Novaes et al. BMC GENOMICS
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- Analyzing real-time PCR data by the comparative CT method
- (2008) Thomas D Schmittgen et al. Nature Protocols
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Dissecting the Molecular Basis of the Regulation of Wood Formation by Auxin in Hybrid Aspen
- (2008) J. Nilsson et al. PLANT CELL
- Tracking Monolignols during Wood Development in Lodgepole Pine
- (2008) M. Kaneda et al. PLANT PHYSIOLOGY
- Role of AUX1 in the control of organ identity during in vitro organogenesis and in mediating tissue specific auxin and cytokinin interaction in Arabidopsis
- (2008) Aparna Kakani et al. PLANTA
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
- (2008) U. Nagalakshmi et al. SCIENCE
- Pretreatment: the key to unlocking low-cost cellulosic ethanol
- (2007) Bin Yang et al. Biofuels Bioproducts & Biorefining-Biofpr
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now