Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach
出版年份 2014 全文链接
标题
Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach
作者
关键词
-
出版物
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
Volume 33, Issue 8, Pages 1720-1730
出版商
Informa UK Limited
发表日期
2014-09-25
DOI
10.1080/07391102.2014.968624
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Unknown
- (2018) Molecular Informatics
- Unknown
- (2016) JOURNAL OF COMPUTATIONAL CHEMISTRY
- Predicting peroxidase subcellular location by hybridizing different descriptors of Chou’ pseudo amino acid patterns
- (2014) Yong-Chun Zuo et al. ANALYTICAL BIOCHEMISTRY
- iTIS-PseTNC: A sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition
- (2014) Wei Chen et al. ANALYTICAL BIOCHEMISTRY
- PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition
- (2014) Wei Chen et al. ANALYTICAL BIOCHEMISTRY
- Prediction of bacterial protein subcellular localization by incorporating various features into Chou's PseAAC and a backward feature selection approach
- (2014) Liqi Li et al. BIOCHIMIE
- iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
- (2014) Shou-Hui Guo et al. BIOINFORMATICS
- Discriminating protein structure classes by incorporating Pseudo Average Chemical Shift to Chou's general PseAAC and Support Vector Machine
- (2014) Maqsood Hayat et al. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
- Prediction of Protein S-Nitrosylation Sites Based on Adapted Normal Distribution Bi-Profile Bayes and Chou’s Pseudo Amino Acid Composition
- (2014) Cangzhi Jia et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- PSNO: Predicting Cysteine S-Nitrosylation Sites by Incorporating Various Sequence-Derived Features into the General Form of Chou’s PseAAC
- (2014) Jian Zhang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets
- (2014) Pufeng Du et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- iHyd-PseAAC: Predicting Hydroxyproline and Hydroxylysine in Proteins by Incorporating Dipeptide Position-Specific Propensity into Pseudo Amino Acid Composition
- (2014) Yan Xu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition and Pseudo Amino Acid Components
- (2014) Wang-Ren Qiu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Chou׳s pseudo amino acid composition improves sequence-based antifreeze protein prediction
- (2014) Sukanta Mondal et al. JOURNAL OF THEORETICAL BIOLOGY
- Prediction of protein structure classes by incorporating different protein descriptors into general Chou’s pseudo amino acid composition
- (2014) Loris Nanni et al. JOURNAL OF THEORETICAL BIOLOGY
- Predict protein structural class for low-similarity sequences by evolutionary difference information into the general form of Chou׳s pseudo amino acid composition
- (2014) Lichao Zhang et al. JOURNAL OF THEORETICAL BIOLOGY
- iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition
- (2014) Bin Liu et al. PLoS One
- iNitro-Tyr: Prediction of Nitrotyrosine Sites in Proteins with General Pseudo Amino Acid Composition
- (2014) Yan Xu et al. PLoS One
- iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition
- (2013) Peng-Mian Feng et al. ANALYTICAL BIOCHEMISTRY
- iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types
- (2013) Xuan Xiao et al. ANALYTICAL BIOCHEMISTRY
- Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
- (2013) Bin Liu et al. BIOINFORMATICS
- propy: a tool to generate various modes of Chou’s PseAAC
- (2013) Dong-Sheng Cao et al. BIOINFORMATICS
- Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition
- (2013) Guo-Liang Fan et al. JOURNAL OF THEORETICAL BIOLOGY
- iCDI-PseFpt: Identify the channel–drug interaction in cellular networking with PseAAC and molecular fingerprints
- (2013) Xuan Xiao et al. JOURNAL OF THEORETICAL BIOLOGY
- A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC
- (2013) Guo-Sheng Han et al. JOURNAL OF THEORETICAL BIOLOGY
- Predicting anticancer peptides with Chou′s pseudo amino acid composition and investigating their mutagenicity via Ames test
- (2013) Zohre Hajisharifi et al. JOURNAL OF THEORETICAL BIOLOGY
- Accurate prediction of protein structural classes by incorporating predicted secondary structure information into the general form of Chou's pseudo amino acid composition
- (2013) Liang Kong et al. JOURNAL OF THEORETICAL BIOLOGY
- Some remarks on predicting multi-label attributes in molecular biosystems
- (2013) Kuo-Chen Chou Molecular BioSystems
- iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
- (2013) Wei Chen et al. NUCLEIC ACIDS RESEARCH
- iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition
- (2013) Yan Xu et al. PLoS One
- iGPCR-Drug: A Web Server for Predicting Interaction between GPCRs and Drugs in Cellular Networking
- (2013) Xuan Xiao et al. PLoS One
- Predicting Antibacterial Peptides by the Concept of Chou's Pseudo-amino Acid Composition and Machine Learning Methods
- (2013) Maede Khosravian et al. PROTEIN AND PEPTIDE LETTERS
- PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions
- (2012) Pufeng Du et al. ANALYTICAL BIOCHEMISTRY
- DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest
- (2012) K. Krishna. Kumar et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Virus-mPLoc: A Fusion Classifier for Viral Protein Subcellular Location Prediction by Incorporating Multiple Sites
- (2012) Hong-Bin Shen et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Predicting protein oxidation sites with feature selection and analysis approach
- (2012) Shen Niu et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
- (2012) Suyu Mei JOURNAL OF THEORETICAL BIOLOGY
- Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou’s pseudo amino acid composition
- (2012) Yen-Kuang Chen et al. JOURNAL OF THEORETICAL BIOLOGY
- Prediction of Allergenic Proteins by Means of the Concept of Chou's Pseudo Amino Acid Composition and a Machine Learning Approach
- (2012) Hassan Mohabatkar et al. Medicinal Chemistry
- Identifying protein quaternary structural attributes by incorporating physicochemical properties into the general form of Chou's PseAAC via discrete wavelet transform
- (2012) Xing-Yu Sun et al. Molecular BioSystems
- iNR-PhysChem: A Sequence-Based Predictor for Identifying Nuclear Receptors and Their Subfamilies via Physical-Chemical Property Matrix
- (2012) Xuan Xiao et al. PLoS One
- Hepatitis C Virus Network Based Classification of Hepatocellular Cirrhosis and Carcinoma
- (2012) Tao Huang et al. PLoS One
- Identification of Colorectal Cancer Related Genes with mRMR and Shortest Path in Protein-Protein Interaction Network
- (2012) Bi-Qing Li et al. PLoS One
- Predicting Secretory Proteins of Malaria Parasite by Incorporating Sequence Evolution Information into Pseudo Amino Acid Composition via Grey System Model
- (2012) Wei-Zhong Lin et al. PLoS One
- iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties
- (2012) Wei Chen et al. PLoS One
- Prediction of Apoptosis Protein Locations with Genetic Algorithms and Support Vector Machines Through a New Mode of Pseudo Amino Acid Composition
- (2012) Krishna Kumar Kandaswamy et al. PROTEIN AND PEPTIDE LETTERS
- Identifying GPCRs and their Types with Chou's Pseudo Amino Acid Composition: An Approach from Multi-scale Energy Representation and Position Specific Scoring Matrix
- (2012) Zia-ur-Rehman et al. PROTEIN AND PEPTIDE LETTERS
- Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou’s PseAAC
- (2012) Maqsood Hayat et al. PROTEIN AND PEPTIDE LETTERS
- Unknown
- (2012) ACM Transactions on Intelligent Systems and Technology
- Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information
- (2011) Loris Nanni et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
- (2011) Hassan Mohabatkar et al. JOURNAL OF THEORETICAL BIOLOGY
- iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites
- (2011) Zhi-Cheng Wu et al. Molecular BioSystems
- iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins
- (2011) Kuo-Chen Chou et al. PLoS One
- A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites
- (2011) Xuan Xiao et al. PLoS One
- iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model
- (2011) Wei-Zhong Lin et al. PLoS One
- A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
- (2010) Sitanshu Sekhar Sahu et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties
- (2010) Krishna Kumar Kandaswamy et al. JOURNAL OF THEORETICAL BIOLOGY
- Some remarks on protein attribute prediction and pseudo amino acid composition
- (2010) Kuo-Chen Chou JOURNAL OF THEORETICAL BIOLOGY
- Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition
- (2010) Hassan Mohabatkar PROTEIN AND PEPTIDE LETTERS
- A top-down approach to enhance the power of predicting human protein subcellular localization: Hum-mPLoc 2.0
- (2009) Hong-Bin Shen et al. ANALYTICAL BIOCHEMISTRY
- Pseudo Amino Acid Composition and its Applications in Bioinformatics, Proteomics and System Biology
- (2009) Kuo-Chen Chou Current Proteomics
- QuatIdent: A Web Server for Identifying Protein Quaternary Structural Attribute by Fusing Functional Domain and Sequential Evolution Information
- (2009) Hong-Bin Shen et al. JOURNAL OF PROTEOME RESEARCH
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- (2009) Maryam Esmaeili et al. JOURNAL OF THEORETICAL BIOLOGY
- Genetic programming for creating Chou’s pseudo amino acid based features for submitochondria localization
- (2008) Loris Nanni et al. AMINO ACIDS
- ConFunc—functional annotation in the twilight zone
- (2008) Mark N. Wass et al. BIOINFORMATICS
- A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis
- (2008) Bin Liu et al. BMC BIOINFORMATICS
- Predicting protein structural classes with pseudo amino acid composition: An approach using geometric moments of cellular automaton image
- (2008) Xuan Xiao et al. JOURNAL OF THEORETICAL BIOLOGY
- Predicting protein fold pattern with functional domain and sequential evolution information
- (2008) Hong-Bin Shen et al. JOURNAL OF THEORETICAL BIOLOGY
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- (2008) D.N. Georgiou et al. JOURNAL OF THEORETICAL BIOLOGY
- The complete genome of an individual by massively parallel DNA sequencing
- (2008) David A. Wheeler et al. NATURE
- DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions
- (2008) Mu Gao et al. NUCLEIC ACIDS RESEARCH
- Predicting Membrane Protein Types by the LLDA Algorithm
- (2008) Tong Wang et al. PROTEIN AND PEPTIDE LETTERS
- PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition
- (2007) Hong-Bin Shen et al. ANALYTICAL BIOCHEMISTRY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started