Predicting Secretory Proteins of Malaria Parasite by Incorporating Sequence Evolution Information into Pseudo Amino Acid Composition via Grey System Model

PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions

(2012) Pufeng Du et al.   ANALYTICAL BIOCHEMISTRY

Targeting Protein Kinases in the Malaria Parasite: Update of an Antimalarial Drug Target

(2012) Veronica M. Zhang et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

DNA-Prot: Identification of DNA Binding Proteins from Protein Sequence Information using Random Forest

(2012) K. Krishna. Kumar et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Dual-Layer Wavelet SVM for Predicting Protein Structural Class Via the General Form of Chou’s Pseudo Amino Acid Composition

(2012) Chao Chen et al.   PROTEIN AND PEPTIDE LETTERS

iLoc-Gpos: A Multi-Layer Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Gram-Positive Bacterial Proteins

(2012) Zhi-Cheng Wu et al.   PROTEIN AND PEPTIDE LETTERS

Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou’s PseAAC

(2012) Maqsood Hayat et al.   PROTEIN AND PEPTIDE LETTERS

Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

(2011) Loris Nanni et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Predicting protein folding rates using the concept of Chou's pseudo amino acid composition

(2011) Jianxiu Guo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites

(2011) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine

(2011) Hassan Mohabatkar et al.   JOURNAL OF THEORETICAL BIOLOGY

MemHyb: Predicting membrane protein types by hybridizing SAAC and PSSM

(2011) Maqsood Hayat et al.   JOURNAL OF THEORETICAL BIOLOGY

iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites

(2011) Zhi-Cheng Wu et al.   Molecular BioSystems

iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites

(2011) Kuo-Chen Chou et al.   Molecular BioSystems

iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins

(2011) Kuo-Chen Chou et al.   PLoS One

Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite Plasmodium falciparum

(2010) Philip M. R. Tedder et al.   BIOINFORMATICS

Amino acid classification based spectrum kernel fusion for protein subnuclear localization

(2010) Suyu Mei et al.   BMC BIOINFORMATICS

A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

(2010) Sitanshu Sekhar Sahu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Computational identification of signalling pathways in Plasmodium falciparum

(2010) Jelili Oyelade et al.   INFECTION GENETICS AND EVOLUTION

Supersecondary structure prediction using Chou's pseudo amino acid composition

(2010) Dongsheng Zou et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information

(2010) Manish Kumar et al.   JOURNAL OF MOLECULAR RECOGNITION

Prediction of protein submitochondria locations based on data fusion of various features of sequences

(2010) Pooya Zakeri et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition

(2010) Maqsood Hayat et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

Machine Learning Methods for Prediction of CDK-Inhibitors

(2010) Jayashree Ramana et al.   PLoS One

Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition

(2010) Hassan Mohabatkar   PROTEIN AND PEPTIDE LETTERS

Using K-minimum increment of diversity to predict secretory proteins of malaria parasite based on groupings of amino acids

(2009) Yong-Chun Zuo et al.   AMINO ACIDS

Prediction of DNA-binding residues from protein sequence information using random forests

(2009) Liangjiang Wang et al.   BMC GENOMICS

QuatIdent: A Web Server for Identifying Protein Quaternary Structural Attribute by Fusing Functional Domain and Sequential Evolution Information

(2009) Hong-Bin Shen et al.   JOURNAL OF PROTEOME RESEARCH

Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses

(2009) Maryam Esmaeili et al.   JOURNAL OF THEORETICAL BIOLOGY

Identification of Plasmodium malariae, a Human Malaria Parasite, in Imported Chimpanzees

(2009) Toshiyuki Hayakawa et al.   PLoS One

Genetic programming for creating Chou’s pseudo amino acid based features for submitochondria localization

(2008) Loris Nanni et al.   AMINO ACIDS

ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information

(2008) Kuo-Chen Chou et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Real value prediction of protein solvent accessibility using enhanced PSSM features

(2008) Darby Chang et al.   BMC BIOINFORMATICS

Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles

(2008) Ruchi Verma et al.   BMC BIOINFORMATICS

Predicting protein structural classes with pseudo amino acid composition: An approach using geometric moments of cellular automaton image

(2008) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

Predicting protein fold pattern with functional domain and sequential evolution information

(2008) Hong-Bin Shen et al.   JOURNAL OF THEORETICAL BIOLOGY

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

(2008) D.N. Georgiou et al.   JOURNAL OF THEORETICAL BIOLOGY

Heterologous expression of plasmodial proteins for structural studies and functional annotation

(2008) Lyn-Marie Birkholtz et al.   MALARIA JOURNAL

T and B-cell Epitopes Prediction of Iranian Saffron (Crocus sativus) Profilin by Bioinformatics Tools

(2008) Hassan Mohabatkar et al.   PROTEIN AND PEPTIDE LETTERS

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY