标题
repRNA: a web server for generating various feature vectors of RNA sequences
作者
关键词
repRNA, Secondary structure of RNA, PseAAC, PseKNC, repDNA, Physicochemical properties, User-defined properties
出版物
MOLECULAR GENETICS AND GENOMICS
Volume 291, Issue 1, Pages 473-481
出版商
Springer Nature
发表日期
2015-06-17
DOI
10.1007/s00438-015-1078-7
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition
- (2015) Zi Liu et al. ANALYTICAL BIOCHEMISTRY
- Discrimination of acidic and alkaline enzyme using Chou’s pseudo amino acid composition in conjunction with probabilistic neural network model
- (2015) Zaheer Ullah Khan et al. JOURNAL OF THEORETICAL BIOLOGY
- Prediction of β-lactamase and its class by Chou’s pseudo-amino acid composition and support vector machine
- (2015) Ravindra Kumar et al. JOURNAL OF THEORETICAL BIOLOGY
- Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC
- (2015) Abdollah Dehzangi et al. JOURNAL OF THEORETICAL BIOLOGY
- Prediction of protein subcellular localization by incorporating multiobjective PSO-based feature subset selection into the general form of Chou’s PseAAC
- (2015) Monalisa Mandal et al. MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING
- Impacts of Bioinformatics to Medicinal Chemistry
- (2015) Kuo-Chen Chou Medicinal Chemistry
- miRNA-dis: microRNA precursor identification based on distance structure status pairs
- (2015) Bin Liu et al. Molecular BioSystems
- Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach
- (2015) Bin Liu et al. PLoS One
- PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition
- (2014) Wei Chen et al. ANALYTICAL BIOCHEMISTRY
- repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects
- (2014) Bin Liu et al. BIOINFORMATICS
- PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions
- (2014) Wei Chen et al. BIOINFORMATICS
- iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
- (2014) Shou-Hui Guo et al. BIOINFORMATICS
- Molecular Science for Drug Development and Biomedicine
- (2014) Wei-Zhu Zhong et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets
- (2014) Pufeng Du et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition and Pseudo Amino Acid Components
- (2014) Wang-Ren Qiu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Chou׳s pseudo amino acid composition improves sequence-based antifreeze protein prediction
- (2014) Sukanta Mondal et al. JOURNAL OF THEORETICAL BIOLOGY
- PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou’s PseAAC and Physicochemical Distance Transformation
- (2014) Bin Liu et al. Molecular Informatics
- iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition
- (2014) Hao Lin et al. NUCLEIC ACIDS RESEARCH
- iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition
- (2014) Bin Liu et al. PLoS One
- Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features
- (2014) Mahmoud Ghandi et al. PLoS Computational Biology
- Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
- (2013) Bin Liu et al. BIOINFORMATICS
- propy: a tool to generate various modes of Chou’s PseAAC
- (2013) Dong-Sheng Cao et al. BIOINFORMATICS
- Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set
- (2013) Leyi Wei et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation
- (2013) Bin Liu et al. Molecular Informatics
- kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets
- (2013) Christopher Fletez-Brant et al. NUCLEIC ACIDS RESEARCH
- iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
- (2013) Wei Chen et al. NUCLEIC ACIDS RESEARCH
- PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions
- (2012) Pufeng Du et al. ANALYTICAL BIOCHEMISTRY
- Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou’s pseudo amino acid composition
- (2012) Yen-Kuang Chen et al. JOURNAL OF THEORETICAL BIOLOGY
- Prediction of Allergenic Proteins by Means of the Concept of Chou's Pseudo Amino Acid Composition and a Machine Learning Approach
- (2012) Hassan Mohabatkar et al. Medicinal Chemistry
- ViennaRNA Package 2.0
- (2011) Ronny Lorenz et al. Algorithms for Molecular Biology
- A k-mer scheme to predict piRNAs and characterize locust piRNAs
- (2011) Yi Zhang et al. BIOINFORMATICS
- Discriminative prediction of mammalian enhancers from DNA sequence
- (2011) D. Lee et al. GENOME RESEARCH
- Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
- (2011) Hassan Mohabatkar et al. JOURNAL OF THEORETICAL BIOLOGY
- Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
- (2011) Suyu Mei JOURNAL OF THEORETICAL BIOLOGY
- A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
- (2010) Sitanshu Sekhar Sahu et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Some remarks on protein attribute prediction and pseudo amino acid composition
- (2010) Kuo-Chen Chou JOURNAL OF THEORETICAL BIOLOGY
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- (2009) Maryam Esmaeili et al. JOURNAL OF THEORETICAL BIOLOGY
- Genetic programming for creating Chou’s pseudo amino acid based features for submitochondria localization
- (2008) Loris Nanni et al. AMINO ACIDS
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- (2008) D.N. Georgiou et al. JOURNAL OF THEORETICAL BIOLOGY
- PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition
- (2007) Hong-Bin Shen et al. ANALYTICAL BIOCHEMISTRY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More