Drug repositioning through incomplete bi-cliques in an integrated drug–target–disease network

Activation and inhibition of CTP synthase from Trypanosoma brucei, the causative agent of African sleeping sickness

(2011) Craig H. Steeves et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Old friends in new guise: repositioning of known drugs with structural bioinformatics

(2011) V. J. Haupt et al.   BRIEFINGS IN BIOINFORMATICS

Exploiting drug-disease relationships for computational drug repositioning

(2011) J. T. Dudley et al.   BRIEFINGS IN BIOINFORMATICS

The flavonoid scaffold as a template for the design of modulators of the vascular Cav1.2 channels

(2011) S Saponara et al.   BRITISH JOURNAL OF PHARMACOLOGY

Computational Polypharmacology with Text Mining and Ontologies

(2011) Conrad Plake et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

RP101 (brivudine) binds to heat shock protein HSP27 (HSPB1) and enhances survival in animals and pancreatic cancer patients

(2011) Jörg-Christian Heinrich et al.   JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY

ReverseScreen3D: A Structure-Based Ligand Matching Method To Identify Protein Targets

(2011) Sarah L. Kinnings et al.   Journal of Chemical Information and Modeling

Active site similarity between human and Plasmodium falciparum phosphodiesterases: considerations for antimalarial drug design

(2011) Brittany L. Howard et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

ChEMBL: a large-scale bioactivity database for drug discovery

(2011) A. Gaulton et al.   NUCLEIC ACIDS RESEARCH

Inhibition of influenza virus replication by plant-derived isoquercetin

(2010) Yunjeong Kim et al.   ANTIVIRAL RESEARCH

The power of protein interaction networks for associating genes with diseases

(2010) Saket Navlakha et al.   BIOINFORMATICS

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

(2010) Y. Yamanishi et al.   BIOINFORMATICS

A quantitative approach to study indirect effects among disease proteins in the human protein interaction network

(2010) Thanh-Phuong Nguyen et al.   BMC Systems Biology

Resveratrol enhances the anti-tumor activity of the mTOR inhibitor rapamycin in multiple breast cancer cell lines mainly by suppressing rapamycin-induced AKT signaling

(2010) Xin He et al.   CANCER LETTERS

Resveratrol, a Red Wine Polyphenol, Suppresses Pancreatic Cancer by Inhibiting Leukotriene A4 Hydrolase

(2010) N. Oi et al.   CANCER RESEARCH

PubChem as a public resource for drug discovery

(2010) Qingliang Li et al.   DRUG DISCOVERY TODAY

Druggable pockets and binding site centric chemical space: a paradigm shift in drug discovery

(2010) Stéphanie Pérot et al.   DRUG DISCOVERY TODAY

Antiproliferative and pro-apoptotic effects of quercetin on human pancreatic carcinoma cell lines EPP85-181P and EPP85-181RDB.

(2010) Sylwia Borska et al.   FOLIA HISTOCHEMICA ET CYTOBIOLOGICA

Resveratrol regulates the PTEN/AKT pathway through androgen receptor-dependent and -independent mechanisms in prostate cancer cell lines

(2010) Yu Wang et al.   HUMAN MOLECULAR GENETICS

The cardioprotective effects of a combination of quercetin and α-tocopherol on isoproterenol-induced myocardial infarcted rats

(2010) V. R. Punithavathi et al.   JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY

Crystal Structure of Cardiac-specific Histone Methyltransferase SmyD1 Reveals Unusual Active Site Architecture

(2010) Nualpun Sirinupong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets

(2010) Fereydoun Hormozdiari et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A side effect resource to capture phenotypic effects of drugs

(2010) Michael Kuhn et al.   Molecular Systems Biology

Antioxidant, Anti-Inflammatory and Anti-Influenza Properties of Components from Chaenomeles speciosa

(2010) Li Zhang et al.   MOLECULES

Quercetin restores plasma nitrite and nitroso species levels in renovascular hypertension

(2010) Marcelo F. Montenegro et al.   NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY

SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison

(2010) J. Ren et al.   NUCLEIC ACIDS RESEARCH

ProBiS: a web server for detection of structurally similar protein binding sites

(2010) J. Konc et al.   NUCLEIC ACIDS RESEARCH

The Comparative Toxicogenomics Database: update 2011

(2010) A. P. Davis et al.   NUCLEIC ACIDS RESEARCH

PROMISCUOUS: a database for network-based drug-repositioning

(2010) J. von Eichborn et al.   NUCLEIC ACIDS RESEARCH

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs

(2010) C. Knox et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2010) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Network-Based Relating Pharmacological and Genomic Spaces for Drug Target Identification

(2010) Shiwen Zhao et al.   PLoS One

Resveratrol Induces Growth Arrest and Apoptosis through Activation of FOXO Transcription Factors in Prostate Cancer Cells

(2010) Qinghe Chen et al.   PLoS One

Discovery of drug mode of action and drug repositioning from transcriptional responses

(2010) F. Iorio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unveiling the role of network and systems biology in drug discovery

(2010) Albert Pujol et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology

(2010) Jacob D. Durrant et al.   PLoS Computational Biology

Semantic Similarity for Automatic Classification of Chemical Compounds

(2010) João D. Ferreira et al.   PLoS Computational Biology

COMPUTATIONAL APPROACHES FOR DRUG REPOSITIONING AND COMBINATION THERAPY DESIGN

(2010) EKATERINA KOTELNIKOVA et al.   Journal of Bioinformatics and Computational Biology

Structural and thermodynamic analysis of thrombin:suramin interaction in solution and crystal phases

(2009) Luis Maurício T.R. Lima et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery

(2009) L. Xie et al.   BIOINFORMATICS

Systematic Evaluation of Drug–Disease Relationships to Identify Leads for Novel Drug Uses

(2009) A P Chiang et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Visualizing the drug target landscape

(2009) Stephen J. Campbell et al.   DRUG DISCOVERY TODAY

Trypanosoma cruzi: In vitro effect of aspirin with nifurtimox and benznidazole

(2009) Rodrigo López-Muñoz et al.   EXPERIMENTAL PARASITOLOGY

Predicting new molecular targets for known drugs

(2009) Michael J. Keiser et al.   NATURE

Lessons from 60 years of pharmaceutical innovation

(2009) Bernard Munos   NATURE REVIEWS DRUG DISCOVERY

Sex Hormones and Modulation of Immunity against Leishmaniasis

(2009) Heidi Snider et al.   NEUROIMMUNOMODULATION

Update of TTD: Therapeutic Target Database

(2009) Feng Zhu et al.   NUCLEIC ACIDS RESEARCH

Trypanocidal activity of the proteasome inhibitor and anti-cancer drug bortezomib

(2009) Dietmar Steverding et al.   Parasites & Vectors

Drug Discovery Using Chemical Systems Biology: Repositioning the Safe Medicine Comtan to Treat Multi-Drug and Extensively Drug Resistant Tuberculosis

(2009) Sarah L. Kinnings et al.   PLoS Computational Biology

Antimalarial activity in mice of resveratrol derivative fromPleuropterus ciliinervis

(2008) H. I. Moon et al.   ANNALS OF TROPICAL MEDICINE AND PARASITOLOGY

Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit

(2008) Noel M O'Boyle et al.   Chemistry Central Journal

Estrogen and progesterone affect responses to malaria infection in female C57BL/6 mice

(2008) Pamela W. Klein et al.   Gender Medicine

Proarrhythmic Potential of Antimicrobial Agents

(2008) J. Simkó et al.   INFECTION

Synthesis and Evaluation of Non-peptidic Cysteine Protease Inhibitors of P. falciparum Derived from Etacrynic Acid

(2008) Marie-Adrienne Dude et al.   MOLECULES

Network pharmacology: the next paradigm in drug discovery

(2008) Andrew L Hopkins   Nature Chemical Biology

Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks

(2008) A. P. Davis et al.   NUCLEIC ACIDS RESEARCH

Physiological and morphological effects of genistein against the liver fluke, Fasciola hepatica

(2008) E. TONER et al.   PARASITOLOGY

Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments

(2008) L. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network properties of genes harboring inherited disease mutations

(2008) I. Feldman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions

(2008) Ryoichi Minai et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Drug Target Identification Using Side-Effect Similarity

(2008) M. Campillos et al.   SCIENCE

Unraveling Protein Networks with Power Graph Analysis

(2008) Loïc Royer et al.   PLoS Computational Biology