A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery

Predicting Protein Function and Binding Profile via Matching of Local Evolutionary and Geometric Surface Patterns

(2009) Yan Yuan Tseng et al.   JOURNAL OF MOLECULAR BIOLOGY

Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

(2009) Andrew C. Wallace et al.   PROTEIN SCIENCE

Mycobacterium tuberculosis interactome analysis unravels potential pathways to drug resistance

(2008) Karthik Raman et al.   BMC MICROBIOLOGY

Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments

(2008) L. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The long and short of it – polyphosphate, PPK and bacterial survival

(2008) Michael R.W. Brown et al.   TRENDS IN BIOCHEMICAL SCIENCES

Protein Functional Surfaces: Global Shape Matching and Local Spatial Alignments of Ligand Binding Sites

(2008) T. ANDREW Binkowski et al.   BMC STRUCTURAL BIOLOGY