Burkholderia pseudomalleisequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

Survival, Sublethal Injury, and Recovery of EnvironmentalBurkholderia pseudomalleiin Soil Subjected to Desiccation

(2013) Eloise Larsen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Comparative genomics of defense systems in archaea and bacteria

(2013) Kira S. Makarova et al.   NUCLEIC ACIDS RESEARCH

Helicobacter pylori DprA alleviates restriction barrier for incoming DNA

(2013) Gajendradhar R. Dwivedi et al.   NUCLEIC ACIDS RESEARCH

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

Progressive genome-wide introgression in agriculturalCampylobacter coli

(2012) Samuel K. Sheppard et al.   MOLECULAR ECOLOGY

Melioidosis

(2012) W. Joost Wiersinga et al.   NEW ENGLAND JOURNAL OF MEDICINE

Solitary restriction endonucleases in prokaryotic genomes

(2012) Anna S. Ershova et al.   NUCLEIC ACIDS RESEARCH

The methylomes of six bacteria

(2012) Iain A. Murray et al.   NUCLEIC ACIDS RESEARCH

Evolution of Burkholderia pseudomallei in Recurrent Melioidosis

(2012) Hillary S. Hayden et al.   PLoS One

Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription

(2012) Christina Kahramanoglou et al.   Nature Communications

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Antimicrobial resistance to ceftazidime involving loss of penicillin-binding protein 3 in Burkholderia pseudomallei

(2011) N. Chantratita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Burkholderia pseudomallei Toxin Inhibits Helicase Activity of Translation Factor eIF4A

(2011) A. Cruz-Migoni et al.   SCIENCE

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

Recombination and Population Structure in Salmonella enterica

(2011) Xavier Didelot et al.   PLoS Genetics

Dindel: Accurate indel calls from short-read data

(2010) C. A. Albers et al.   GENOME RESEARCH

A window into third-generation sequencing

(2010) E. E. Schadt et al.   HUMAN MOLECULAR GENETICS

The Accessory Genome of Pseudomonas aeruginosa

(2010) V. L. Kung et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

The Epidemiology and Clinical Spectrum of Melioidosis: 540 Cases from the 20 Year Darwin Prospective Study

(2010) Bart J. Currie et al.   PLoS Neglected Tropical Diseases

A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence

(2010) Tannistha Nandi et al.   PLoS Pathogens

A novel RPMXR motif among class II 5-enolpyruvylshikimate-3-phosphate synthases is required for enzymatic activity and glyphosate resistance

(2009) Liang Li et al.   JOURNAL OF BIOTECHNOLOGY

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

(2009) Iwanka Kozarewa et al.   NATURE METHODS

Evolution of pathogenicity in the Bacillus cereus group

(2009) Xavier Didelot et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Burkholderia pseudomallei Is Genetically Diverse in Agricultural Land in Northeast Thailand

(2009) Vanaporn Wuthiekanun et al.   PLoS Neglected Tropical Diseases

CAIcal: A combined set of tools to assess codon usage adaptation

(2008) Pere Puigbò et al.   Biology Direct

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Genetic Diversity and Microevolution of Burkholderia pseudomallei in the Environment

(2008) Narisara Chantratita et al.   PLoS Neglected Tropical Diseases

The Core and Accessory Genomes of Burkholderia pseudomallei: Implications for Human Melioidosis

(2008) Siew Hoon Sim et al.   PLoS Pathogens