Genome sequencing defines phylogeny and spread of methicillin-resistantStaphylococcus aureusin a high transmission setting

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data

(2014) Colin J. Worby et al.   PLoS Computational Biology

Whole-Genome Sequencing Shows That Patient-to-Patient Transmission Rarely Accounts for Acquisition of Staphylococcus aureus in an Intensive Care Unit

(2013) J. R. Price et al.   CLINICAL INFECTIOUS DISEASES

A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4

(2013) Nicholas J. Loman et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Selection for qacA carriage in CC22, but not CC30, methicillin-resistant Staphylococcus aureus bloodstream infection isolates during a successful institutional infection control programme

(2013) Jonathan A. Otter et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Global spread of antibiotic resistance: the example of New Delhi metallo-β-lactamase (NDM)-mediated carbapenem resistance

(2013) Alan P. Johnson et al.   JOURNAL OF MEDICAL MICROBIOLOGY

MRSA in Africa: Filling the Global Map of Antimicrobial Resistance

(2013) Matthew E. Falagas et al.   PLoS One

Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study

(2012) Simon R Harris et al.   LANCET INFECTIOUS DISEASES

Genomic variation landscape of the human gut microbiome

(2012) Siegfried Schloissnig et al.   NATURE

MRSA epidemic linked to a quickly spreading colonization and virulence determinant

(2012) Min Li et al.   NATURE MEDICINE

Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

(2012) Claudio U. Köser et al.   NEW ENGLAND JOURNAL OF MEDICINE

Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing

(2012) E. S. Snitkin et al.   Science Translational Medicine

A pilot study of rapid benchtop sequencing ofStaphylococcus aureusandClostridium difficilefor outbreak detection and surveillance

(2012) David W Eyre et al.   BMJ Open

Quantifying Type-Specific Reproduction Numbers for Nosocomial Pathogens: Evidence for Heightened Transmission of an Asian Sequence Type 239 MRSA Clone

(2012) Ben S. Cooper et al.   PLoS Computational Biology

Impact of Combined Low-Level Mupirocin and Genotypic Chlorhexidine Resistance on Persistent Methicillin-Resistant Staphylococcus aureus Carriage After Decolonization Therapy: A Case-control Study

(2011) Andie S. Lee et al.   CLINICAL INFECTIOUS DISEASES

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quasispecies as a matter of fact: Viruses and beyond

(2011) Samuel Ojosnegros et al.   VIRUS RESEARCH

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Efficacy and Limitation of a Chlorhexidine‐Based Decolonization Strategy in Preventing Transmission of Methicillin‐ResistantStaphylococcus aureusin an Intensive Care Unit

(2009) Rahul Batra et al.   CLINICAL INFECTIOUS DISEASES

Decline of EMRSA-16 amongst methicillin-resistant Staphylococcus aureus causing bacteraemias in the UK between 2001 and 2007

(2009) M. J. Ellington et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genome Sequence of a Recently Emerged, Highly Transmissible, Multi-Antibiotic- and Antiseptic-Resistant Variant of Methicillin-Resistant Staphylococcus aureus, Sequence Type 239 (TW)

(2009) M. T. G. Holden et al.   JOURNAL OF BACTERIOLOGY

Staphylococcus aureus disease and drug resistance in resource-limited countries in south and east Asia

(2009) Emma K Nickerson et al.   LANCET INFECTIOUS DISEASES

Staphylococcus aureus Bacteraemia in a Tropical Setting: Patient Outcome and Impact of Antibiotic Resistance

(2009) Emma K. Nickerson et al.   PLoS One

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH