Application of histone modification-specific interaction domains as an alternative to antibodies
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Application of histone modification-specific interaction domains as an alternative to antibodies
Authors
Keywords
-
Journal
GENOME RESEARCH
Volume 24, Issue 11, Pages 1842-1853
Publisher
Cold Spring Harbor Laboratory
Online
2014-10-10
DOI
10.1101/gr.170985.113
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- deepTools: a flexible platform for exploring deep-sequencing data
- (2014) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- ChIP-less analysis of chromatin states
- (2014) Zhangli Su et al. Epigenetics & Chromatin
- Readout of Epigenetic Modifications
- (2013) Dinshaw J. Patel et al. Annual Review of Biochemistry
- A General Molecular Affinity Strategy for Global Detection and Proteomic Analysis of Lysine Methylation
- (2013) Kaitlyn E. Moore et al. MOLECULAR CELL
- A Method for Systematic Mapping of Protein Lysine Methylation Identifies Functions for HP1β in DNA Damage Response
- (2013) Huadong Liu et al. MOLECULAR CELL
- Recombinant antibodies to histone post-translational modifications
- (2013) Takamitsu Hattori et al. NATURE METHODS
- From spots to beads-PTM-peptide bead arrays for the characterization of anti-histone antibodies
- (2013) Yvonne Heubach et al. PROTEOMICS
- Epigenetic Reprogramming in Cancer
- (2013) M. L. Suva et al. SCIENCE
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- (2012) S. G. Landt et al. GENOME RESEARCH
- Broad Ranges of Affinity and Specificity of Anti-Histone Antibodies Revealed by a Quantitative Peptide Immunoprecipitation Assay
- (2012) Shingo Nishikori et al. JOURNAL OF MOLECULAR BIOLOGY
- Quantitative Assessment of Chromatin Immunoprecipitation Grade Antibodies Directed against Histone Modifications Reveals Patterns of Co-occurring Marks on Histone Protein Molecules
- (2012) Sally E. Peach et al. MOLECULAR & CELLULAR PROTEOMICS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation
- (2012) Scott B Rothbart et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- EpiExplorer: live exploration and global analysis of large epigenomic datasets
- (2012) Konstantin Halachev et al. GENOME BIOLOGY
- Application of Celluspots peptide arrays for the analysis of the binding specificity of epigenetic reading domains to modified histone tails
- (2011) Ina Bock et al. BMC BIOCHEMISTRY
- Chipster: user-friendly analysis software for microarray and other high-throughput data
- (2011) M Aleksi Kallio et al. BMC GENOMICS
- Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification
- (2011) Minjia Tan et al. CELL
- Regulation of chromatin by histone modifications
- (2011) Andrew J Bannister et al. CELL RESEARCH
- Detailed specificity analysis of antibodies binding to modified histone tails with peptide arrays
- (2011) Ina Bock et al. Epigenetics
- The ATRX-ADD domain binds to H3 tail peptides and reads the combined methylation state of K4 and K9
- (2011) Arunkumar Dhayalan et al. HUMAN MOLECULAR GENETICS
- Structural Insights for MPP8 Chromodomain Interaction with Histone H3 Lysine 9: Potential Effect of Phosphorylation on Methyl-Lysine Binding
- (2011) Yanqi Chang et al. JOURNAL OF MOLECULAR BIOLOGY
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome
- (2011) Shigeki Iwase et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Combinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatin
- (2011) Sebastian Eustermann et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Bio-CAP: a versatile and highly sensitive technique to purify and characterise regions of non-methylated DNA
- (2011) Neil P. Blackledge et al. NUCLEIC ACIDS RESEARCH
- Structural Basis for Specific Binding of Human MPP8 Chromodomain to Histone H3 Methylated at Lysine 9
- (2011) Jing Li et al. PLoS One
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- (2011) PLOS BIOLOGY
- Cistrome: an integrative platform for transcriptional regulation studies
- (2011) Tao Liu et al. GENOME BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Antibody validation
- (2010) Jennifer Bordeaux et al. BIOTECHNIQUES
- Influence of Combinatorial Histone Modifications on Antibody and Effector Protein Recognition
- (2010) Stephen M. Fuchs et al. CURRENT BIOLOGY
- Recognition and Specificity Determinants of the Human Cbx Chromodomains
- (2010) Lilia Kaustov et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Dnmt3a PWWP Domain Reads Histone 3 Lysine 36 Trimethylation and Guides DNA Methylation
- (2010) Arunkumar Dhayalan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Chromatin structure and the inheritance of epigenetic information
- (2010) Raphaël Margueron et al. NATURE REVIEWS GENETICS
- An assessment of histone-modification antibody quality
- (2010) Thea A Egelhofer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail
- (2010) Yingying Zhang et al. NUCLEIC ACIDS RESEARCH
- seqMINER: an integrated ChIP-seq data interpretation platform
- (2010) Tao Ye et al. NUCLEIC ACIDS RESEARCH
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- CEAS: cis-regulatory element annotation system
- (2009) Hyunjin Shin et al. BIOINFORMATICS
- A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
- (2009) Chongzhi Zang et al. BIOINFORMATICS
- Combined epigenetic therapy with the histone methyltransferase EZH2 inhibitor 3-deazaneplanocin A and the histone deacetylase inhibitor panobinostat against human AML cells
- (2009) W. Fiskus et al. BLOOD
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Protein lysine methyltransferase G9a acts on non-histone targets
- (2008) Philipp Rathert et al. Nature Chemical Biology
- Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography
- (2008) Marjorie Brand et al. Nature Protocols
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started