Network analysis of ABA-dependent and ABA-independent drought responsive genes in Arabidopsis thaliana

A computational interactome for prioritizing genes associated with complex agronomic traits in rice (Oryza sativa)

(2017) Shiwei Liu et al.   PLANT JOURNAL

Plant hormone-mediated regulation of stress responses

(2016) Vivek Verma et al.   BMC PLANT BIOLOGY

An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signaling

(2016) Fernando Aleman et al.   Scientific Reports

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression

(2015) Yuichi Aoki et al.   PLANT AND CELL PHYSIOLOGY

Exploring Jasmonates in the Hormonal Network of Drought and Salinity Responses

(2015) Michael Riemann et al.   Frontiers in Plant Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

ABA-dependent and ABA-independent signaling in response to osmotic stress in plants

(2014) Takuya Yoshida et al.   CURRENT OPINION IN PLANT BIOLOGY

The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat

(2014) Kazuo Nakashima et al.   Frontiers in Plant Science

Recent Advances in Dissecting Stress-Regulatory Crosstalk in Rice

(2013) Rita Sharma et al.   Molecular Plant

The Arabidopsis NAC Transcription Factor ANAC096 Cooperates with bZIP-Type Transcription Factors in Dehydration and Osmotic Stress Responses

(2013) Z.-Y. Xu et al.   PLANT CELL

Cross-talk between abscisic acid-dependent and abscisic acid-independent pathways during abiotic stress

(2013) Aryadeep Roychoudhury et al.   PLANT CELL REPORTS

The Suppression of WRKY44 by GIGANTEA-miR172 Pathway Is Involved in Drought Response of Arabidopsis thaliana

(2013) Yingying Han et al.   PLoS One

The interaction of plant biotic and abiotic stresses: from genes to the field

(2012) N. J. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

MYC2: The Master in Action

(2012) Kemal Kazan et al.   Molecular Plant

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants

(2012) Yasunari Fujita et al.   PHYSIOLOGIA PLANTARUM

Hydrogen sulfide interacting with abscisic acid in stomatal regulation responses to drought stress in Arabidopsis

(2012) Zhuping Jin et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

RNA-Seq analysis in MeV

(2011) E. A. Howe et al.   BIOINFORMATICS

Hormone balance and abiotic stress tolerance in crop plants

(2011) Zvi Peleg et al.   CURRENT OPINION IN PLANT BIOLOGY

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Mechanistic Analysis of AKT1 Regulation by the CBL–CIPK–PP2CA Interactions

(2011) Wen-Zhi Lan et al.   Molecular Plant

An ABRE Promoter Sequence is Involved in Osmotic Stress-Responsive Expression of the DREB2A Gene, Which Encodes a Transcription Factor Regulating Drought-Inducible Genes in Arabidopsis

(2011) June-Sik Kim et al.   PLANT AND CELL PHYSIOLOGY

The Predicted Arabidopsis Interactome Resource and Network Topology-Based Systems Biology Analyses

(2011) M. Lin et al.   PLANT CELL

DREB2C Interacts with ABF2, a bZIP Protein Regulating Abscisic Acid-Responsive Gene Expression, and Its Overexpression Affects Abscisic Acid Sensitivity

(2010) S.-j. Lee et al.   PLANT PHYSIOLOGY

Molecular and Physiological Analysis of Drought Stress in Arabidopsis Reveals Early Responses Leading to Acclimation in Plant Growth

(2010) A. Harb et al.   PLANT PHYSIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Three SnRK2 Protein Kinases are the Main Positive Regulators of Abscisic Acid Signaling in Response to Water Stress in Arabidopsis

(2009) Yasunari Fujita et al.   PLANT AND CELL PHYSIOLOGY

Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses

(2009) K. Nakashima et al.   PLANT PHYSIOLOGY

Plant drought stress: effects, mechanisms and management

(2008) M. Farooq et al.   Agronomy for Sustainable Development

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways

(2008) Z. Zhao et al.   PLANT CELL

Role of plant hormones in plant defence responses

(2008) Rajendra Bari et al.   PLANT MOLECULAR BIOLOGY

Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis

(2008) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA