Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance

A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines

(2012) Leandro Costa do Nascimento et al.   GENETICS AND MOLECULAR BIOLOGY

SNP discovery by high-throughput sequencing in soybean

(2010) Xiaolei Wu et al.   BMC GENOMICS

SNP discovery performance of two second-generation sequencing platforms in the NOD2 gene region

(2010) Espen Melum et al.   HUMAN MUTATION

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

In silico Analysis of Transcription Factor Repertoire and Prediction of Stress Responsive Transcription Factors in Soybean

(2009) K. Mochida et al.   DNA RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

SNP high-throughput screening in grapevine using the SNPlex™ genotyping system

(2008) Massimo Pindo et al.   BMC PLANT BIOLOGY

Soybean GmMYB76, GmMYB92 and GmMYB177 genes confer stress tolerance in transgenic Arabidopsis plants

(2008) Yong Liao et al.   CELL RESEARCH

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants

(2008) C. Duran et al.   NUCLEIC ACIDS RESEARCH

Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants

(2008) Qi-Yun Zhou et al.   PLANT BIOTECHNOLOGY JOURNAL