4.4 Article

The Between-Population Genetic Architecture of Growth, Maturation, and Plasticity in Atlantic Salmon

Journal

GENETICS
Volume 196, Issue 4, Pages 1277-+

Publisher

OXFORD UNIV PRESS INC
DOI: 10.1534/genetics.114.161729

Keywords

epistasis; generation mean analysis; genotype-by-environment interaction; reaction norms; resource allocation

Funding

  1. Natural Science and Engineering Research Council (Canada)

Ask authors/readers for more resources

The between-population genetic architecture for growth and maturation has not been examined in detail for many animal species despite its central importance in understanding hybrid fitness. We studied the genetic architecture of population divergence in: (i) maturation probabilities at the same age; (ii) size at age and growth, while accounting for maturity status and sex; and (iii) growth plasticity in response to environmental factors, using divergent wild and domesticated Atlantic salmon (Salmo salar). Our work examined two populations and their multigenerational hybrids in a common experimental arrangement in which salinity and quantity of suspended sediments were manipulated to mimic naturally occurring environmental variation. Average specific growth rates across environments differed among crosses, maturity groups, and cross-by-maturity groups, but a growth-rate reduction in the presence of suspended sediments was equal for all groups. Our results revealed both additive and nonadditive outbreeding effects for size at age and for growth rates that differed with life stage, as well as the presence of different sex- and size-specific maturation probabilities between populations. The major implication of our work is that estimates of the genetic architecture of growth and maturation can be biased if one does not simultaneously account for temporal changes in growth and for different maturation probabilities between populations. Namely, these correlated traits interact differently within each population and between sexes and among generations, due to nonadditive effects and a level of independence in the genetic control for traits. Our results emphasize the challenges to investigating and predicting phenotypic changes resulting from between-population outbreeding.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.4
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

Cytosine methylation patterns suggest a role of methylation in plastic and adaptive responses to temperature in European grayling (Thymallus thymallus) populations

Tiina Savilammi, Spiros Papakostas, Erica H. Leder, L. Asbjorn Vollestad, Paul V. Debes, Craig R. Primmer

Summary: Temperature plays a key role in shaping organisms, particularly ectotherms. The study on European grayling embryos revealed differences in genome-wide methylation patterns and genetic polymorphisms among populations from different thermal origins. The findings support the significant role of epigenetic mechanisms in modulating plastic responses to environmental changes.

EPIGENETICS (2021)

Article Genetics & Heredity

The Atlantic salmon whole blood transcriptome and how it relates to major locus maturation genotypes and other tissues

Samuel C. Andrew, Craig R. Primmer, Paul V. Debes, Jaakko Erkinaro, Jukka-Pekka Verta

Summary: This study constructed a transcriptome for Atlantic salmon whole blood using RNA-seq and identified transcriptomic proxies for the major maturation timing gene vgll3. Differentially expressed genes related to early and late maturing genotypes were associated with ribosomal subunit genes. Comparing the blood transcriptome to reference transcriptomes of other tissues, it was found that the blood transcriptome was unique compared to other tissues' transcription profiles.

MARINE GENOMICS (2021)

Article Biochemistry & Molecular Biology

The strength and form of natural selection on transcript abundance in the wild

Freed Ahmad, Paul Debes, Ilkka Nousiainen, Siim Kahar, Lilian Pukk, Riho Gross, Mikhail Ozerov, Anti Vasemagi

Summary: The study introduces a new analytical framework for quantifying ongoing natural selection at the transcriptome level in wild vertebrates. By integrating mark-recapture field sampling and RNA-sequencing with regression-based selection analysis, the study estimated selection on transcript abundance in wild salmonid fish affected by an extracellular parasite. The results reveal upregulation of mitotic cell cycle process in infected hosts and disruptive selection signals on transcripts related to host immune defense, host-pathogen interactions, cellular repair, and maintenance.

MOLECULAR ECOLOGY (2021)

Article Parasitology

Know your enemy - transcriptome of myxozoan Tetracapsuloides bryosalmonae reveals potential drug targets against proliferative kidney disease in salmonids

Freed Ahmad, Paul Debes, Lilian Pukk, Siim Kahar, Hanna Hartikainen, Riho Gross, Anti Vasemagi

Summary: A computational pipeline was developed to separate T. bryosalmonae transcripts and identify four protein targets for anti-parasitic drug development. Additionally, differentially expressed parasite genes in fish with varying infection levels were identified, paving the way for future genomic research and drug development.

PARASITOLOGY (2021)

Article Ecology

Warming temperatures and ectoparasitic sea lice impair internal organs in juvenile Atlantic salmon

Kate E. Medcalf, Jeffrey A. Hutchings, Mark D. Fast, Anna Kuparinen, Sean C. Godwin

Summary: The study shows that climate change and salmon farming can have significant impacts on the health of wild Atlantic salmon, compromising liver energy stores and cardiac muscle performance. Stressors associated with ocean warming and coastal aquaculture may impair vital organs in wild salmon, affecting their overall fitness.

MARINE ECOLOGY PROGRESS SERIES (2021)

Article Evolutionary Biology

Multiple-batch spawning as a bet-hedging strategy in highly stochastic environments: An exploratory analysis of Atlantic cod

Sara Hocevar, Jeffrey A. Hutchings, Anna Kuparinen

Summary: The study investigates the adaptiveness of multiple-batch spawning as a bet-hedging strategy, showing that it can increase fitness under fluctuating environmental conditions.

EVOLUTIONARY APPLICATIONS (2021)

Editorial Material Multidisciplinary Sciences

Throwing down a genomic gauntlet on fisheries-induced evolution

Jeffrey A. Hutchings, Anna Kuparinen

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Fisheries

Five centuries of cod catches in Eastern Canada

Rebecca Schijns, Rainer Froese, Jeffrey A. Hutchings, Daniel Pauly

Summary: The fishery for Northern Atlantic cod off Newfoundland and Labrador witnessed a dramatic decline from sustainable fishing to collapsed stock due to industrial trawl fishing under a seemingly sophisticated management regime. Research suggests that if fishing effort and mortality had been stabilized in the 1980s, precautionary annual yields could have been sustained, highlighting the importance of incorporating prior knowledge to inform sustainable management practices.

ICES JOURNAL OF MARINE SCIENCE (2021)

Article Fisheries

Trends in marine survival of Atlantic salmon populations in eastern Canada

Sebastian A. Pardo, Geir H. Bolstad, J. Brian Dempson, Julien April, Ross A. Jones, Dustin Raab, Jeffrey A. Hutchings

Summary: The study found that the trends in marine survival varied among different populations of Atlantic salmon, with the changes in marine survival primarily affecting the returning numbers after one year for the fish. However, other factors also played a role in the variations in return abundances among populations.

ICES JOURNAL OF MARINE SCIENCE (2021)

Article Biochemistry & Molecular Biology

A novel hyperbaric swimming respirometer allows the simulation of varying swimming depths in fish respirometry studies

Klaus Wysujack, Lasse Marohn, Constantin Lindemann, Bjorn Illing, Marko Freese, Jan-Dag Pohlmann, Stefan Reiser, Paul Vincent Debes, Laura Meskendahl, Bernd Pelster, Reinhold Hanel

Summary: The Hyperbaric Swimming Respirometer (HSR) is a new experimental setup that simulates various pressure, temperature, and flow velocity profiles to study the physiological characteristics of fish in a simulated depth range. The system consists of three swimming tunnels, each with the same volume and control components.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2022)

Article Fisheries

Incorporating intra-annual variability in fisheries abundance data to better capture population dynamics

Raphael R. McDonald, David M. Keith, Jessica A. Sameoto, Jeffrey A. Hutchings, Joanna Mills Flemming

Summary: The study suggests that treating each individual survey tow as an independent estimate of the true underlying biomass accurately captures population dynamics and reliably estimates variance parameters. This approach shows improvements in parameter estimation and reduced uncertainty in practical applications.

FISHERIES RESEARCH (2022)

Article Ecology

Host Developmental Stage Effects on Parasite Resistance and Tolerance

Ines Klemme, Paul Vincent Debes, Craig Robert Primmer, Laura Sofia Harkonen, Jaakko Erkinaro, Pekka Hyvarinen, Anssi Karvonen

Summary: In this study, the role of developmental stage in resistance and tolerance in Atlantic salmon was investigated. The results showed that developmental transition is associated with reduced resistance but does not affect tolerance. Additionally, it was observed that tolerance slopes can be largely independent of infection. These findings suggest that the relative importance of different defense types may vary with host development.

AMERICAN NATURALIST (2022)

Article Biology

Life-history genotype explains variation in migration activity in Atlantic salmon (Salmo salar)

Petri T. Niemela, Ines Klemme, Anssi Karvonen, Pekka Hyvarinen, Paul Debes, Jaakko Erkinaro, Marion Sinclair-Waters, Victoria L. Pritchard, Laura S. Harkonen, Craig R. Primmer

Summary: Research shows that there are differences in activity expression among Atlantic salmon life-history genotypes. The vgll3*E allele is associated with increased activity in females, while the vgll3*L allele is associated with increased activity in males. These sex-dependent effects may contribute to maintaining genetic life-history variation within populations.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2022)

Article Fisheries

The effect of temperature and dietary energy content on female maturation and egg nutritional content in Atlantic salmon

Katja S. Maamela, Eirik R. Asheim, Paul V. Debes, Andrew H. House, Jaakko Erkinaro, Petra Liljestrom, Craig R. Primmer, Kenyon B. Mobley

Summary: The environment, including temperature and diet, affects reproductive traits in female fish. In this study, the effect of temperature and diet on maturation and egg traits in Atlantic salmon was investigated. A temperature difference of 2 degrees Celsius delayed maturation in female salmon, while a reduction in dietary energy content had no effect. Diet did not impact body size, condition, fecundity, egg size, or protein content, but a higher energy diet increased egg lipid content. These findings suggest that the nutritional quality of the female's diet can impact the energy provisioning of eggs and potentially affect the fitness of offspring.

JOURNAL OF FISH BIOLOGY (2023)

Article Ecology

Sex-specific trait architecture in a spider with sexual size dimorphism

Simona Kralj-Fiser, Matjaz Kuntner, Paul Vincent Debes

Summary: Sexual dimorphism may evolve under antagonistic selection, where different optimal traits for the sexes are favored. Sexual-size dimorphism (SSD) is often assumed to indicate the resolution of sexual conflict, but the decoupling of trait architecture between sexes remains largely unknown. We tested the architecture of body size in the African hermit spider and found that the genetic and maternal effects on body size differed between sexes, suggesting a sex-specific architecture that allows for independent body-size evolution.

JOURNAL OF EVOLUTIONARY BIOLOGY (2023)

No Data Available