Characterization of the complete mitochondrial genome of flower-breeding Drosophila incompta (Diptera, Drosophilidae)

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

(2014) Z.-X. Chen et al.   GENOME RESEARCH

The complete mitochondrial genome ofCervaphis quercus(Insecta: Hemiptera: Aphididae: Greenideinae)

(2014) Yuan Wang et al.   Insect Science

A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data

(2013) B. D. O'Fallon et al.   BIOINFORMATICS

TheDrosophila flavopilosaspecies group (Diptera, Drosophilidae)

(2013) Lizandra J. Robe et al.   FLY

Monophyly ofWolbachia pipientisgenomes withinDrosophila melanogaster: geographic structuring, titre variation and host effects across five populations

(2013) Angela M. Early et al.   MOLECULAR ECOLOGY

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Recent demographic history of cactophilicDrosophilaspecies can be related to Quaternary palaeoclimatic changes in South America

(2012) Fernando Faria Franco et al.   JOURNAL OF BIOGEOGRAPHY

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Mitochondrial Pseudogenes in the Nuclear Genomes of Drosophila

(2012) Hubert H. Rogers et al.   PLoS One

Population Genomics of the Wolbachia Endosymbiont in Drosophila melanogaster

(2012) Mark F. Richardson et al.   PLoS Genetics

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Radiation of the ,,Drosophila“ subgenus (Drosophilidae, Diptera) in the Neotropics

(2010) Lizandra J. Robe et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Characterization of mitochondrial control region, two intergenic spacers and tRNAs of Zaprionus indianus (Diptera: Drosophilidae)

(2009) Norma Machado da Silva et al.   GENETICA

Phylogeography of the cactophilic speciesDrosophila gouveai: demographic events and divergence timing in dry vegetation enclaves in eastern Brazil

(2009) Evandro M. Moraes et al.   JOURNAL OF BIOGEOGRAPHY

Comparative Genomics of Drosophila mtDNA: Novel Features of Conservation and Change Across Functional Domains and Lineages

(2009) Kristi L. Montooth et al.   JOURNAL OF MOLECULAR EVOLUTION

Molecular phylogeny of the Drosophila tripunctata and closely related species groups (Diptera: Drosophilidae)

(2009) Luciane Mendes Hatadani et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Expression profiling of Drosophila mitochondrial genes via deep mRNA sequencing

(2009) Tatiana Teixeira Torres et al.   NUCLEIC ACIDS RESEARCH

Signals of demographic expansion in Drosophila virilis

(2008) Patricia M Mirol et al.   BMC EVOLUTIONARY BIOLOGY

High mitochondrial diversity in geographically widespread butterflies of Madagascar: A test of the DNA barcoding approach

(2008) Marjorie C. Linares et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

(2008) H. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA