Evaluation of online miRNA resources for biomedical applications

Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals

(2012) Kahori Takane et al.   BMC GENOMICS

Self-complementary sequence context in mature miRNAs

(2010) Mohitosh Maiti et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets

(2010) Y. Friedman et al.   BIOINFORMATICS

MiRonTop: mining microRNAs targets across large scale gene expression studies

(2010) K. Le Brigand et al.   BIOINFORMATICS

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

miRMaid: a unified programming interface for microRNA data resources

(2010) Anders Jacobsen et al.   BMC BIOINFORMATICS

MTar: a computational microRNA target prediction architecture for human transcriptome

(2010) Vinod Chandra et al.   BMC BIOINFORMATICS

miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

(2010) Haroon Naeem et al.   BMC BIOINFORMATICS

PuTmiR: A database for extracting neighboring transcription factors of human microRNAs

(2010) Sanghamitra Bandyopadhyay et al.   BMC BIOINFORMATICS

TargetSpy: a supervised machine learning approach for microRNA target prediction

(2010) Martin Sturm et al.   BMC BIOINFORMATICS

MapMi: automated mapping of microRNA loci

(2010) Jose Afonso Guerra-Assuncao et al.   BMC BIOINFORMATICS

TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs

(2010) Ming Lu et al.   BMC BIOINFORMATICS

Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM)

(2010) Sumeet Agarwal et al.   BMC BIOINFORMATICS

Gene bi-targeting by viral and human miRNAs

(2010) Isana Veksler-Lublinsky et al.   BMC BIOINFORMATICS

Unified translation repression mechanism for microRNAs and upstream AUGs

(2010) Subramanian S Ajay et al.   BMC GENOMICS

MicroRNAs in neurodegenerative disorders

(2010) Eunsung Junn et al.   CELL CYCLE

MicroRNA Regulation in Cardiovascular Disease

(2010) P.A. da Costa Martins et al.   CURRENT DRUG TARGETS

Emerging paradigms of regulated microRNA processing

(2010) M. A. Newman et al.   GENES & DEVELOPMENT

Signatures of RNA binding proteins globally coupled to effective microRNA target sites

(2010) A. Jacobsen et al.   GENOME RESEARCH

Identification of homologous microRNAs in 56 animal genomes

(2010) Sung-Chou Li et al.   GENOMICS

Flanking region sequence information to refine microRNA target predictions

(2010) Russiachand Heikham et al.   JOURNAL OF BIOSCIENCES

S-MED: Sarcoma microRNA Expression Database

(2010) Aaron L Sarver et al.   LABORATORY INVESTIGATION

Posttranscriptional Regulation of MicroRNA Biogenesis in Animals

(2010) Haruhiko Siomi et al.   MOLECULAR CELL

MicroRNAs – targeting and target prediction

(2010) Takaya Saito et al.   New Biotechnology

RepTar: a database of predicted cellular targets of host and viral miRNAs

(2010) Naama Elefant et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis

(2010) G. Sales et al.   NUCLEIC ACIDS RESEARCH

The DIANA-mirExTra Web Server: From Gene Expression Data to MicroRNA Function

(2010) Panagiotis Alexiou et al.   PLoS One

MatureBayes: A Probabilistic Algorithm for Identifying the Mature miRNA within Novel Precursors

(2010) Katerina Gkirtzou et al.   PLoS One

ExprTarget: An Integrative Approach to Predicting Human MicroRNA Targets

(2010) Eric R. Gamazon et al.   PLoS One

Differential regulation of microRNA stability

(2010) S. Bail et al.   RNA

Making RISC

(2010) Tomoko Kawamata et al.   TRENDS IN BIOCHEMICAL SCIENCES

PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes

(2010) Andreas Ruepp et al.   GENOME BIOLOGY

miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data

(2010) David Hendrix et al.   GENOME BIOLOGY

A Brief Review on the Mechanisms of miRNA Regulation

(2010) Yimei Cai et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

First step in pre-miRNAs processing by human Dicer

(2009) Carlos Fabián Flores-jasso et al.   ACTA PHARMACOLOGICA SINICA

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples

(2009) Sanghamitra Bandyopadhyay et al.   BIOINFORMATICS

mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets

(2009) William Ritchie et al.   BIOINFORMATICS

HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models

(2009) Sabah Kadri et al.   BMC BIOINFORMATICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

MicroRNA and leukemia: Tiny molecule, great function

(2009) Haifeng Zhao et al.   CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY

Redefining MicroRNA Targets

(2009) Hervé Seitz   CURRENT BIOLOGY

Survey of Computational Algorithms for MicroRNA Target Prediction

(2009) Dong Yue et al.   CURRENT GENOMICS

Evolutionary Origin and Genomic Organization of Micro-RNA Genes in Immunoglobulin Lambda Variable Region Gene Family

(2009) Sabyasachi Das   MOLECULAR BIOLOGY AND EVOLUTION

Lowly Expressed Human MicroRNA Genes Evolve Rapidly

(2009) Han Liang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cellular MicroRNA and P Bodies Modulate Host-HIV-1 Interactions

(2009) Robin Nathans et al.   MOLECULAR CELL

RNA silencing

(2009) Angela K. Eggleston   NATURE

Revisiting the principles of microRNA target recognition and mode of action

(2009) Peter Brodersen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Current tools for the identification of miRNA genes and their targets

(2009) N. D. Mendes et al.   NUCLEIC ACIDS RESEARCH

TransmiR: a transcription factor–microRNA regulation database

(2009) Juan Wang et al.   NUCLEIC ACIDS RESEARCH

MirZ: an integrated microRNA expression atlas and target prediction resource

(2009) J. Hausser et al.   NUCLEIC ACIDS RESEARCH

Diversity and evolution of MicroRNA gene clusters

(2009) YanFeng Zhang et al.   Science in China. Series C, Life sciences / Chinese Academy of Sciences

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

(2009) Jessica Severin et al.   GENOME BIOLOGY

HuMiTar: A sequence-based method for prediction of human microRNA targets

(2008) Jishou Ruan et al.   Algorithms for Molecular Biology

Interspecies regulation of microRNAs and their targets

(2008) M HA et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

MiRTif: a support vector machine-based microRNA target interaction filter

(2008) Yuchen Yang et al.   BMC BIOINFORMATICS

MicroRNA target prediction by expression analysis of host genes

(2008) V. A. Gennarino et al.   GENOME RESEARCH

Podocyte-Specific Deletion of Dicer Alters Cytoskeletal Dynamics and Causes Glomerular Disease

(2008) S. J. Harvey et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

The impact of microRNAs on protein output

(2008) Daehyun Baek et al.   NATURE

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein–enriched transcripts

(2008) Molly Hammell et al.   NATURE METHODS

The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution

(2008) Katsutomo Okamura et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

miRecords: an integrated resource for microRNA-target interactions

(2008) F. Xiao et al.   NUCLEIC ACIDS RESEARCH

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

MicroRNomics: a newly emerging approach for disease biology

(2008) Chunxiang Zhang   PHYSIOLOGICAL GENOMICS

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One

Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication

(2008) Jasmine K Ahluwalia et al.   Retrovirology

Deadenylation is a widespread effect of miRNA regulation

(2008) A. Eulalio et al.   RNA

miRDB: A microRNA target prediction and functional annotation database with a wiki interface

(2008) X. Wang   RNA