Comprehensive genetic analysis identifies a pathognomonicNAB2/STAT6fusion gene, nonrandom secondary genomic imbalances, and a characteristic gene expression profile in solitary fibrous tumor

Whole-exome sequencing identifies a recurrent NAB2-STAT6 fusion in solitary fibrous tumors

(2013) Juliann Chmielecki et al.   NATURE GENETICS

Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing

(2013) Dan R Robinson et al.   NATURE GENETICS

TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal

(2013) P. J. Killela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DELLY: structural variant discovery by integrated paired-end and split-read analysis

(2012) T. Rausch et al.   BIOINFORMATICS

NuRD Suppresses Pluripotency Gene Expression to Promote Transcriptional Heterogeneity and Lineage Commitment

(2012) Nicola Reynolds et al.   Cell Stem Cell

Comprehensive genome characterization of solitary fibrous tumors using high-resolution array-based comparative genomic hybridization

(2012) François Bertucci et al.   GENES CHROMOSOMES & CANCER

Fusion of the AHRR and NCOA2 genes through a recurrent translocation t(5;8)(p15;q13) in soft tissue angiofibroma results in upregulation of aryl hydrocarbon receptor target genes

(2012) Yuesheng Jin et al.   GENES CHROMOSOMES & CANCER

Egr-1: new conductor for the tissue repair orchestra directs harmony (regeneration) or cacophony (fibrosis)

(2012) Swati Bhattacharyya et al.   JOURNAL OF PATHOLOGY

Solitary fibrous tumor: a clinicopathological study of 110 cases and proposed risk assessment model

(2012) Elizabeth G Demicco et al.   MODERN PATHOLOGY

Repressor element-1 silencing transcription factor (REST)-dependent epigenetic remodeling is critical to ischemia-induced neuronal death

(2012) K.-M. Noh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution

(2011) Huanying Ge et al.   BIOINFORMATICS

FUS-CREB3L2/L1-Positive Sarcomas Show a Specific Gene Expression Profile with Upregulation of CD24 and FOXL1

(2011) E. Moller et al.   CLINICAL CANCER RESEARCH

Early growth response transcription factors: Key mediators of fibrosis and novel targets for anti-fibrotic therapy

(2011) Swati Bhattacharyya et al.   MATRIX BIOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

IGF2 over-expression in solitary fibrous tumours is independent of anatomical location and is related to loss of imprinting

(2010) Mihai Hajdu et al.   JOURNAL OF PATHOLOGY

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

(2009) K. Ye et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Transcriptional Cofactor Nab2 Is Induced by TGF-β and Suppresses Fibroblast Activation: Physiological Roles and Impaired Expression in Scleroderma

(2009) Swati Bhattacharyya et al.   PLoS One