Unravelling personalized dysfunctional gene network of complex diseases based on differential network model

Identifying critical transitions of complex diseases based on a single sample

(2014) Rui Liu et al.   BIOINFORMATICS

EdgeMarker: Identifying differentially correlated molecule pairs as edge-biomarkers

(2014) Wanwei Zhang et al.   JOURNAL OF THEORETICAL BIOLOGY

Deciphering early development of complex diseases by progressive module network

(2014) Tao Zeng et al.   METHODS

MCentridFS: a tool for identifying module biomarkers for multi-phenotypes from high-throughput data

(2014) Zhenshu Wen et al.   Molecular BioSystems

Prediction and early diagnosis of complex diseases by edge-network

(2013) Xiangtian Yu et al.   BIOINFORMATICS

Edgotype: a fundamental link between genotype and phenotype

(2013) Nidhi Sahni et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Network biomarkers reveal dysfunctional gene regulations during disease progression

(2013) Tao Zeng et al.   FEBS Journal

The many faces of diabetes: a disease with increasing heterogeneity

(2013) Tiinamaija Tuomi et al.   LANCET

Gene-pair expression signatures reveal lineage control

(2013) Merja Heinäniemi et al.   NATURE METHODS

iPcc: a novel feature extraction method for accurate disease class discovery and prediction

(2013) Xianwen Ren et al.   NUCLEIC ACIDS RESEARCH

Modelling biological systems from molecules to dynamical networks

(2012) Yong Wang et al.   BMC Systems Biology

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy

(2012) Bolin Chen et al.   PROTEOMICS

Fast network centrality analysis using GPUs

(2011) Zhiao Shi et al.   BMC BIOINFORMATICS

TMPRSS2-ERG -specific transcriptional modulation is associated with prostate cancer biomarkers and TGF-β signaling

(2011) Jan C Brase et al.   BMC CANCER

Translational medicine: Cancer lessons from mice to humans

(2011) David Tuveson et al.   NATURE

Principal network analysis: identification of subnetworks representing major dynamics using gene expression data

(2010) Yongsoo Kim et al.   BIOINFORMATICS

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Alternative splicing and biological heterogeneity in prostate cancer

(2009) Prabhakar Rajan et al.   Nature Reviews Urology

Differential dependency network analysis to identify condition-specific topological changes in biological networks

(2008) Bai Zhang et al.   BIOINFORMATICS

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

(2008) A. Ozgur et al.   BIOINFORMATICS

Penalized feature selection and classification in bioinformatics

(2008) S. Ma et al.   BRIEFINGS IN BIOINFORMATICS

Inferring Pathway Activity toward Precise Disease Classification

(2008) Eunjung Lee et al.   PLoS Computational Biology

Structural information content of networks: Graph entropy based on local vertex functionals

(2007) Matthias Dehmer et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY