Detection and quantification of native microbial populations on soil-grown rice roots by catalyzed reporter deposition-fluorescencein situhybridization

Spatio-temporal variability of microbial abundance and community structure in the puddled layer of a paddy soil cultivated with wetland rice (Oryza sativa L.)

(2013) Hannes Schmidt et al.   APPLIED SOIL ECOLOGY

Soil zymography – A novel in situ method for mapping distribution of enzyme activity in soil

(2013) Marie Spohn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Evaluation of tyramide solutions for an improved detection and enumeration of single microbial cells in soil by CARD-FISH

(2012) Hannes Schmidt et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Gold-FISH: A new approach for the in situ detection of single microbial cells combining fluorescence and scanning electron microscopy

(2012) Hannes Schmidt et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies

(2012) Adrian Ho et al.   Environmental Microbiology Reports

Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle

(2011) Anastasia Bragina et al.   ISME Journal

Methanotrophic bacteria associated to rice roots: the cultivar effect assessed by T-RFLP and microarray analysis

(2011) Claudia Lüke et al.   Environmental Microbiology Reports

Root Colonization by Pseudomonas sp. DSMZ 13134 and Impact on the Indigenous Rhizosphere Bacterial Community of Barley

(2010) Katharina Buddrus-Schiemann et al.   MICROBIAL ECOLOGY

Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.

(2010) Svetlana E. Belova et al.   Environmental Microbiology Reports

Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment

(2009) Marko Pavlekovic et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Molecular tools in rhizosphere microbiology—from single-cell to whole-community analysis

(2009) Jan Sørensen et al.   PLANT AND SOIL

Rhizosphere: biophysics, biogeochemistry and ecological relevance

(2009) Philippe Hinsinger et al.   PLANT AND SOIL

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Rice roots select for type I methanotrophs in rice field soil

(2009) Liqin Wu et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-FISH) and NanoSIMS

(2008) S. Behrens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

(2008) Rudolf Amann et al.   NATURE REVIEWS MICROBIOLOGY

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

(2008) N. Musat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARD-FISH)

(2008) Thilo Eickhorst et al.   SOIL BIOLOGY & BIOCHEMISTRY