Systems biology of cellular rhythms

Central and Peripheral Circadian Clocks in Mammals

(2012) Jennifer A. Mohawk et al.   Annual Review of Neuroscience

Transcription Factor Oscillations Induce Differential Gene Expressions

(2012) Keng Boon Wee et al.   BIOPHYSICAL JOURNAL

Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock

(2012) A. C. Oates et al.   DEVELOPMENT

Effect of positive feedback loops on the robustness of oscillations in the network of cyclin-dependent kinases driving the mammalian cell cycle

(2012) Claude Gérard et al.   FEBS Journal

Modelling the effects of calcium waves and oscillations on saliva secretion

(2012) Laurence Palk et al.   JOURNAL OF THEORETICAL BIOLOGY

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops

(2012) Alexandra Pokhilko et al.   Molecular Systems Biology

Peroxiredoxins are conserved markers of circadian rhythms

(2012) Rachel S. Edgar et al.   NATURE

Model for Glucagon Secretion by Pancreatic α-Cells

(2012) Virginia González-Vélez et al.   PLoS One

p53 Dynamics Control Cell Fate

(2012) J. E. Purvis et al.   SCIENCE

Engineering Molecular Circuits Using Synthetic Biology in Mammalian Cells

(2012) Markus Wieland et al.   Annual Review of Chemical and Biomolecular Engineering

Entrainment of the Mammalian Cell Cycle by the Circadian Clock: Modeling Two Coupled Cellular Rhythms

(2012) Claude Gérard et al.   PLoS Computational Biology

Vertebrate Segmentation: From Cyclic Gene Networks to Scoliosis

(2011) Olivier Pourquié   CELL

Crosstalk between Components of Circadian and Metabolic Cycles in Mammals

(2011) Gad Asher et al.   Cell Metabolism

Intracellular and intercellular processes determine robustness of the circadian clock

(2011) John B. Hogenesch et al.   FEBS LETTERS

Different types of oscillations in Notch and Fgf signaling regulate the spatiotemporal periodicity of somitogenesis

(2011) Y. Niwa et al.   GENES & DEVELOPMENT

Myxococcus xanthus Swarms Are Driven by Growth and Regulated by a Pacemaker

(2011) D. Kaiser et al.   JOURNAL OF BACTERIOLOGY

A systematic survey of the response of a model NF-κB signalling pathway to TNFα stimulation

(2011) Yunjiao Wang et al.   JOURNAL OF THEORETICAL BIOLOGY

Synthetic in vitro transcriptional oscillators

(2011) J. Kim et al.   Molecular Systems Biology

Circadian rhythms persist without transcription in a eukaryote

(2011) John S. O’Neill et al.   NATURE

Control of Drosophila endocycles by E2F and CRL4CDT2

(2011) Norman Zielke et al.   NATURE

Circadian clocks in human red blood cells

(2011) John S. O’Neill et al.   NATURE

Switches and latches: a biochemical tug-of-war between the kinases and phosphatases that control mitosis

(2011) M. R. Domingo-Sananes et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rising Cyclin-CDK Levels Order Cell Cycle Events

(2011) Catherine Oikonomou et al.   PLoS One

A Computational Model of the Ionic Currents, Ca2+ Dynamics and Action Potentials Underlying Contraction of Isolated Uterine Smooth Muscle

(2011) Wing-Chiu Tong et al.   PLoS One

Entrainment of a Population of Synthetic Genetic Oscillators

(2011) O. Mondragon-Palomino et al.   SCIENCE

A skeleton model for the network of cyclin-dependent kinases driving the mammalian cell cycle

(2011) C. Gerard et al.   Interface Focus

A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation

(2011) Susan D. Hester et al.   PLoS Computational Biology

Systems Biology of Mammalian Circadian Clocks

(2010) Hideki Ukai et al.   Annual Review of Physiology

The Mammalian Circadian Timing System: Organization and Coordination of Central and Peripheral Clocks

(2010) Charna Dibner et al.   Annual Review of Physiology

Continuous light exposure causes cumulative stress that affects the localization oscillation dynamics of the transcription factor Msn2p

(2010) Kristofer Bodvard et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Periodic Cyclin-Cdk Activity Entrains an Autonomous Cdc14 Release Oscillator

(2010) Ying Lu et al.   CELL

In vitroregulation of circadian phosphorylation rhythm of cyanobacterial clock protein KaiC by KaiA and KaiB

(2010) Masato Nakajima et al.   FEBS LETTERS

Oscillatory Ca2+ dynamics and cell cycle resumption at fertilization in mammals: a modelling approach

(2010) Genevive Dupont et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

From structure to dynamics: Frequency tuning in the p53-Mdm2 network. II

(2010) Djomangan A. Ouattara et al.   JOURNAL OF THEORETICAL BIOLOGY

Driving the cell cycle with a minimal CDK control network

(2010) Damien Coudreuse et al.   NATURE

Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes

(2010) Biliana Marcheva et al.   NATURE

A synchronized quorum of genetic clocks

(2010) Tal Danino et al.   NATURE

Clocks not winding down: unravelling circadian networks

(2010) Eric E. Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A synthetic-natural hybrid oscillator in human cells

(2010) J. E. Toettcher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent advances in studies of spontaneous activity in smooth muscle: Ubiquitous pacemaker cells

(2010) Miyako Takaki et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

The Onset of Collective Behavior in Social Amoebae

(2010) T. Gregor et al.   SCIENCE

Circadian Gating of the Cell Cycle Revealed in Single Cyanobacterial Cells

(2010) Q. Yang et al.   SCIENCE

From puffs to global Ca2+ signals: How molecular properties shape global signals

(2009) Alexander Skupin et al.   CHAOS

The molecular clockwork of a protein-based circadian oscillator

(2009) Joseph S. Markson et al.   FEBS LETTERS

Reduced amounts and abnormal forms of phospholipase C zeta (PLC ) in spermatozoa from infertile men

(2009) E. Heytens et al.   HUMAN REPRODUCTION

A tunable synthetic mammalian oscillator

(2009) Marcel Tigges et al.   NATURE

Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle

(2009) C. Gerard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell fate decision mediated by p53 pulses

(2009) X.-P. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Building biological memory by linking positive feedback loops

(2009) D.-E. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A model of the cell-autonomous mammalian circadian clock

(2009) H. P. Mirsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pulsatile Stimulation Determines Timing and Specificity of NF- B-Dependent Transcription

(2009) L. Ashall et al.   SCIENCE

Inositol trisphosphate and calcium signalling mechanisms

(2008) Michael J. Berridge   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Modeling the circadian clock: From molecular mechanism to physiological disorders

(2008) Jean-Christophe Leloup et al.   BIOESSAYS

Stochastic Aspects of Oscillatory Ca2+ Dynamics in Hepatocytes

(2008) Geneviève Dupont et al.   BIOPHYSICAL JOURNAL

Feedback regulation of opposing enzymes generates robust, all-or-none bistable responses

(2008) James E. Ferrell   CURRENT BIOLOGY

Oscillating signaling pathways during embryonic development

(2008) Alexander Aulehla et al.   CURRENT OPINION IN CELL BIOLOGY

The vertebrate segmentation clock: the tip of the iceberg

(2008) Ertuğrul M Özbudak et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Dual KaiC-based oscillations constitute the circadian system of cyanobacteria

(2008) Y. Kitayama et al.   GENES & DEVELOPMENT

Stochastic modelling of nucleocytoplasmic oscillations of the transcription factor Msn2 in yeast

(2008) D. Gonze et al.   Journal of the Royal Society Interface

Dissecting the dynamics of the Hes1 genetic oscillator

(2008) Hiroshi Momiji et al.   JOURNAL OF THEORETICAL BIOLOGY

Modeling the segmentation clock as a network of coupled oscillations in the Notch, Wnt and FGF signaling pathways

(2008) Albert Goldbeter et al.   JOURNAL OF THEORETICAL BIOLOGY

Rapid Cycling and Precocious Termination of G1 Phase in Cells Expressing CDK1AF

(2008) Joseph R. Pomerening et al.   MOLECULAR BIOLOGY OF THE CELL

Frequency-modulated nuclear localization bursts coordinate gene regulation

(2008) Long Cai et al.   NATURE

A fast, robust and tunable synthetic gene oscillator

(2008) Jesse Stricker et al.   NATURE

Design principles of biochemical oscillators

(2008) Béla Novák et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops

(2008) T. Y.-C. Tsai et al.   SCIENCE