Post-transcriptional regulatory networks play a key role in noise reduction that is conserved from micro-organisms to mammals

CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

(2011) Pieter Audenaert et al.   BIOINFORMATICS

MicroRNA-200b Regulates Vascular Endothelial Growth Factor-Mediated Alterations in Diabetic Retinopathy

(2011) K. McArthur et al.   DIABETES

miRWalk – Database: Prediction of possible miRNA binding sites by “walking” the genes of three genomes

(2011) Harsh Dweep et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Interplay between Posttranscriptional and Posttranslational Interactions of RNA-Binding Proteins

(2011) Nitish Mittal et al.   JOURNAL OF MOLECULAR BIOLOGY

Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks

(2011) Tom Michoel et al.   Molecular BioSystems

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

(2011) M. V. Lee et al.   Molecular Systems Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast

(2011) Anagha Joshi et al.   NUCLEIC ACIDS RESEARCH

Gene regulation by RNA binding proteins and microRNAs in angiogenesis

(2011) Sung-Hee Chang et al.   TRENDS IN MOLECULAR MEDICINE

Genetic Variation Shapes Protein Networks Mainly through Non-transcriptional Mechanisms

(2011) Eric J. Foss et al.   PLOS BIOLOGY

The Role of Incoherent MicroRNA-Mediated Feedforward Loops in Noise Buffering

(2011) Matteo Osella et al.   PLoS Computational Biology

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data

(2011) Chao Cheng et al.   PLoS Computational Biology

CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse

(2010) Olivier Friard et al.   BMC BIOINFORMATICS

Signatures of RNA binding proteins globally coupled to effective microRNA target sites

(2010) A. Jacobsen et al.   GENOME RESEARCH

starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

(2010) Jian-Hua Yang et al.   NUCLEIC ACIDS RESEARCH

sRNATarBase: A comprehensive database of bacterial sRNA targets verified by experiments

(2010) Y. Cao et al.   RNA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

MicroRNAs Induced During Ischemic Preconditioning

(2010) Soon-Tae Lee et al.   STROKE

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks

(2009) N. Mittal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circuitry of mRNA regulation

(2009) Alexander Kanitz et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Stress-Dependent Coordination of Transcriptome and Translatome in Yeast

(2009) Regula E Halbeisen et al.   PLOS BIOLOGY

Noise Management by Molecular Networks

(2009) Frank J. Bruggeman et al.   PLoS Computational Biology

RNA-binding proteins and post-transcriptional gene regulation

(2008) Tina Glisovic et al.   FEBS LETTERS

A quantitative comparison of sRNA-based and protein-based gene regulation

(2008) Pankaj Mehta et al.   Molecular Systems Biology

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells

(2008) Z. Bar-Joseph et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-binding proteins in human genetic disease

(2008) Kiven E. Lukong et al.   TRENDS IN GENETICS

Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System

(2008) Daniel J Hogan et al.   PLOS BIOLOGY