Novel microRNA-like viral small regulatory RNAs arising during human hepatitis A virus infection

MicroRNA-like viral small RNA from Dengue virus 2 autoregulates its replication in mosquito cells

(2014) M. Hussain et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of microRNA expression profile by small RNA sequencing in Down syndrome fetuses

(2013) YONG XU et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

Simultaneous and complete genome sequencing of influenza A and B with high coverage by Illumina MiSeq Platform

(2013) Wiriya Rutvisuttinunt et al.   JOURNAL OF VIROLOGICAL METHODS

Transcriptome Sequencing and Differential Gene Expression Analysis of Delayed Gland Morphogenesis in Gossypium australe during Seed Germination

(2013) Tao Tao et al.   PLoS One

SNP Discovery by Illumina-Based Transcriptome Sequencing of the Olive and the Genetic Characterization of Turkish Olive Genotypes Revealed by AFLP, SSR and SNP Markers

(2013) Hilal Betul Kaya et al.   PLoS One

Virus-Encoded microRNAs: An Overview and a Look to the Future

(2013) Rodney P. Kincaid et al.   PLoS Pathogens

Processing of virus-derived cytoplasmic primary-microRNAs

(2013) Jillian S. Shapiro   Wiley Interdisciplinary Reviews-RNA

Novel and Conserved Micrornas in Dalian Purple Urchin (Strongylocentrotus Nudus) Identified by Next Generation Sequencing

(2012) Zhenlin Wei et al.   International Journal of Biological Sciences

Computational Identification of MicroRNAs in Strawberry Expressed Sequence Tags and Validation of Their Precise Sequences by miR-RACE

(2012) Qing-Hua Dong et al.   JOURNAL OF HEREDITY

RNA virus microRNA that mimics a B-cell oncomiR

(2012) R. P. Kincaid et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for a cytoplasmic microprocessor of pri-miRNAs

(2012) J. S. Shapiro et al.   RNA

MicroRNAs and human retroviruses

(2011) Laurent Houzet et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

A systematic analysis of the skeletal muscle miRNA transcriptome of chicken varieties with divergent skeletal muscle growth identifies novel miRNAs and differentially expressed miRNAs

(2011) Tingting Li et al.   BMC GENOMICS

In Vivo Delivery of Cytoplasmic RNA Virus-derived miRNAs

(2011) Ryan A Langlois et al.   MOLECULAR THERAPY

MicroRNA history: Discovery, recent applications, and next frontiers

(2011) Maria I. Almeida et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Competition for XPO5 binding between Dicer mRNA, pre-miRNA and viral RNA regulates human Dicer levels

(2011) Yamina Bennasser et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

West Nile virus encodes a microRNA-like small RNA in the 3' untranslated region which up-regulates GATA4 mRNA and facilitates virus replication in mosquito cells

(2011) M. Hussain et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing of virus-infected cells reveals HIV-encoded small RNAs

(2011) N. C. T. Schopman et al.   NUCLEIC ACIDS RESEARCH

Identification of a Novel Marine Fish Virus, Singapore Grouper Iridovirus-Encoded MicroRNAs Expressed in Grouper Cells by Solexa Sequencing

(2011) Yang Yan et al.   PLoS One

Implications of RNA virus-produced miRNAs

(2011) Andrew Varble et al.   RNA Biology

An evolutionarily conserved, alternatively spliced, intron in the p68/DDX5 DEAD-box RNA helicase gene encodes a novel miRNA

(2011) H. C. Moore et al.   RNA

Virus-encoded microRNAs

(2011) Adam Grundhoff et al.   VIROLOGY

Viruses, microRNAs, and Host Interactions

(2010) Rebecca L. Skalsky et al.   Annual Review of Microbiology

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)

(2010) Chuan-Zhi Zhao et al.   BMC PLANT BIOLOGY

Identification of Novel MicroRNA-Like Molecules Generated from Herpesvirus and Host tRNA Transcripts

(2010) T. A. Reese et al.   JOURNAL OF VIROLOGY

Functional microRNA generated from a cytoplasmic RNA virus

(2010) Harald Rouha et al.   NUCLEIC ACIDS RESEARCH

Transmission of Single HIV-1 Genomes and Dynamics of Early Immune Escape Revealed by Ultra-Deep Sequencing

(2010) Will Fischer et al.   PLoS One

Engineered RNA viral synthesis of microRNAs

(2010) A. Varble et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs

(2010) Q. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noncanonical cytoplasmic processing of viral microRNAs

(2010) J. S. Shapiro et al.   RNA

Five Questions about Viruses and MicroRNAs

(2010) Bryan R. Cullen   PLoS Pathogens

Six RNA Viruses and Forty-One Hosts: Viral Small RNAs and Modulation of Small RNA Repertoires in Vertebrate and Invertebrate Systems

(2010) Poornima Parameswaran et al.   PLoS Pathogens

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

High throughput sequencing of microRNAs in chicken somites

(2009) Tina Rathjen et al.   FEBS LETTERS

Large-scale genome analysis reveals unique features of microRNAs

(2009) Baohong Zhang et al.   GENE

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

(2008) Witold Filipowicz et al.   NATURE REVIEWS GENETICS

Merkel cell polyomavirus encodes a microRNA with the ability to autoregulate viral gene expression

(2008) Gil Ju Seo et al.   VIROLOGY

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

(2007) Markus Hafner et al.   METHODS