The human skeletal muscle transcriptome: sex differences, alternative splicing, and tissue homogeneity assessed with RNA sequencing

Limb-girdle muscular dystrophy 1F is caused by a microdeletion in the transportin 3 gene

(2013) Maria J. Melià et al.   BRAIN

Gastrocnemius mitochondrial respiration: are there any differences between men and women?

(2013) Jonathan R. Thompson et al.   JOURNAL OF SURGICAL RESEARCH

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics

(2013) Rui M M Branca et al.   NATURE METHODS

Alternative splicing: a pivotal step between eukaryotic transcription and translation

(2013) Alberto R. Kornblihtt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs

(2013) Matthew J. Hangauer et al.   PLoS Genetics

A Combined Proteomic and Transcriptomic Approach Shows Diverging Molecular Mechanisms in Thoracic Aortic Aneurysm Development in Patients with Tricuspid- And Bicuspid Aortic Valve

(2012) Sanela Kjellqvist et al.   MOLECULAR & CELLULAR PROTEOMICS

Alternative splice variant PGC-1α-b is strongly induced by exercise in human skeletal muscle

(2011) J. Norrbom et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Repeated muscle biopsies through a single skin incision do not elicit muscle signaling, but IL-6 mRNA and STAT3 phosphorylation increase in injured muscle

(2011) Borja Guerra et al.   JOURNAL OF APPLIED PHYSIOLOGY

Resistance exercise training influences skeletal muscle immune activation: a microarray analysis

(2011) Paul M. Gordon et al.   JOURNAL OF APPLIED PHYSIOLOGY

Mitochondrial regulators of fatty acid metabolism reflect metabolic dysfunction in type 2 diabetes mellitus

(2011) Sameer S. Kulkarni et al.   METABOLISM-CLINICAL AND EXPERIMENTAL

The expression of myosin heavy chain (MHC) genes in human skeletal muscle is related to metabolic characteristics involved in the pathogenesis of type 2 diabetes

(2011) Anders H. Olsson et al.   MOLECULAR GENETICS AND METABOLISM

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(2011) Sanela Kurtovic et al.   MOLECULAR MEDICINE

Scalable Transcriptome Preparation for Massive Parallel Sequencing

(2011) Henrik Stranneheim et al.   PLoS One

Immune Response and Mitochondrial Metabolism Are Commonly Deregulated in DMD and Aging Skeletal Muscle

(2011) Daniel Baron et al.   PLoS One

Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster

(2011) B. Hartmann et al.   RNA

Acute endurance exercise increases the nuclear abundance of PGC-1α in trained human skeletal muscle

(2010) Jonathan P. Little et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Skeletal muscle gene expression in response to resistance exercise: sex specific regulation

(2010) Dongmei Liu et al.   BMC GENOMICS

Effects of 3 days unloading on molecular regulators of muscle size in humans

(2010) T. Gustafsson et al.   JOURNAL OF APPLIED PHYSIOLOGY

Using molecular classification to predict gains in maximal aerobic capacity following endurance exercise training in humans

(2010) James A. Timmons et al.   JOURNAL OF APPLIED PHYSIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Different atrophy-hypertrophy transcription pathways in muscles affected by severe and mild spinal muscular atrophy

(2009) Caterina Millino et al.   BMC Medicine

Sex-specific and lineage-specific alternative splicing in primates

(2009) R. Blekhman et al.   GENOME RESEARCH

A transient antioxidant stress response accompanies the onset of disuse atrophy in human skeletal muscle

(2009) Luciano Dalla Libera et al.   JOURNAL OF APPLIED PHYSIOLOGY

Large-scale mRNA analysis of female skeletal muscles during 60 days of bed rest with and without exercise or dietary protein supplementation as countermeasures

(2009) A. Chopard et al.   PHYSIOLOGICAL GENOMICS

Sex Differences in Global mRNA Content of Human Skeletal Muscle

(2009) Amy C. Maher et al.   PLoS One

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences

(2008) Wan-Lin Su et al.   BMC GENOMICS

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Sex-Related Differences in Gene Expression in Human Skeletal Muscle

(2008) Stephen Welle et al.   PLoS One