Proteomes of pathogenicEscherichia coli/Shigellagroup surveyed in their host environments

Proteomic analysis of uropathogenicEscherichia coli

(2014) Phillip Cash   Expert Review of Proteomics

The binary protein-protein interaction landscape of Escherichia coli

(2014) Seesandra V Rajagopala et al.   NATURE BIOTECHNOLOGY

Analysis of the Proteome of Intracellular Shigella flexneri Reveals Pathways Important for Intracellular Growth

(2013) Rembert Pieper et al.   INFECTION AND IMMUNITY

Analysis of Soluble Protein Complexes inShigella flexneriReveals the Influence of Temperature on the Amount of Lipopolysaccharide

(2013) Chang Niu et al.   MOLECULAR & CELLULAR PROTEOMICS

Systems-Level Overview of Host Protein Phosphorylation DuringShigella flexneriInfection Revealed by Phosphoproteomics

(2013) Christoph Schmutz et al.   MOLECULAR & CELLULAR PROTEOMICS

The gastrointestinal mucus system in health and disease

(2013) Malin E. V. Johansson et al.   Nature Reviews Gastroenterology & Hepatology

Proteomic View of Interactions of Shiga Toxin-Producing Escherichia coli with the Intestinal Environment in Gnotobiotic Piglets

(2013) Rembert Pieper et al.   PLoS One

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

(2013) J. M. Monk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A phylogenomic analysis of Escherichia coli / Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation

(2012) Yan Zhang et al.   BMC EVOLUTIONARY BIOLOGY

Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury

(2012) Derrick E Fouts et al.   Journal of Translational Medicine

Signaling-mediated bacterial persister formation

(2012) Nicole M Vega et al.   Nature Chemical Biology

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

In vivo versus in vitro protein abundance analysis of Shigella dysenteriae type 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism

(2011) Srilatha Kuntumalla et al.   BMC MICROBIOLOGY

The rediscovery of uromodulin (Tamm–Horsfall protein): from tubulointerstitial nephropathy to chronic kidney disease

(2011) Luca Rampoldi et al.   KIDNEY INTERNATIONAL

Characterizing the Escherichia coli O157:H7 Proteome Including Protein Associations with Higher Order Assemblies

(2011) Rembert Pieper et al.   PLoS One

Serine protease autotransporters from Shigella flexneri and pathogenic Escherichia coli target a broad range of leukocyte glycoproteins

(2011) F. Ruiz-Perez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase

(2010) Kaspar Valgepea et al.   BMC Systems Biology

Shigella deploy multiple countermeasures against host innate immune responses

(2010) Hiroshi Ashida et al.   CURRENT OPINION IN MICROBIOLOGY

The Proteome ofShigella flexneri2a 2457T Grown at 30 and 37 °C

(2010) Li Zhu et al.   MOLECULAR & CELLULAR PROTEOMICS

The endogenous Toll-like receptor 4 agonist S100A8/S100A9 (calprotectin) as innate amplifier of infection, autoimmunity, and cancer

(2009) Jan M. Ehrchen et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome

(2009) Srilatha Kuntumalla et al.   Proteome Science

TheShigella dysenteriaeserotype 1 proteome, profiled in the host intestinal environment, reveals major metabolic modifications and increased expression of invasive proteins

(2009) Rembert Pieper et al.   PROTEOMICS

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Fitness of Escherichia coli during Urinary Tract Infection Requires Gluconeogenesis and the TCA Cycle

(2009) Christopher J. Alteri et al.   PLoS Pathogens

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results

(2008) John C Braisted et al.   BMC BIOINFORMATICS

Complicated Catheter-Associated Urinary Tract Infections Due to Escherichia coli and Proteus mirabilis

(2008) S. M. Jacobsen et al.   CLINICAL MICROBIOLOGY REVIEWS

Molecular Pathogenesis of Shigella spp.: Controlling Host Cell Signaling, Invasion, and Death by Type III Secretion

(2008) G. N. Schroeder et al.   CLINICAL MICROBIOLOGY REVIEWS

The versatility of Shigella effectors

(2007) Michinaga Ogawa et al.   NATURE REVIEWS MICROBIOLOGY